Evidence map›Paper›PMID 27206411›Full record

ArticleAnalytical and bioanalytical chemistry2016

Ambient ionization mass spectrometric analysis of human surgical specimens to distinguish renal cell carcinoma from healthy renal tissue.

Clint M Alfaro, Alan K Jarmusch, Valentina Pirro, Kevin S Kerian, Timothy A Masterson, Liang Cheng, R Graham Cooks

Abstract readEvaluation Study
In one paragraph

Article in Analytical and bioanalytical chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
5.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 47 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Kidney Lipidomics by Mass Spectrometry Imaging: A Focus on the Glomerulus.International journal of molecular sciences · 2019
    Review
  12. Article
  13. Review
  14. Review
  15. Article
  16. Article
  17. Article
  18. Integration of Ion Mobility MSAnalytical chemistry · 2017
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Clint M AlfaroDepartment of Chemistry, Center for Analytical Instrumentation Development and Purdue University Center for Cancer Research, Purdue University, West Lafayette, IN, 47907, USA.
Alan K JarmuschDepartment of Chemistry, Center for Analytical Instrumentation Development and Purdue University Center for Cancer Research, Purdue University, West Lafayette, IN, 47907, USA.
Valentina PirroDepartment of Chemistry, Center for Analytical Instrumentation Development and Purdue University Center for Cancer Research, Purdue University, West Lafayette, IN, 47907, USA.
Kevin S KerianDepartment of Chemistry, Center for Analytical Instrumentation Development and Purdue University Center for Cancer Research, Purdue University, West Lafayette, IN, 47907, USA.
Timothy A MastersonDepartment of Urology, Indiana University School of Medicine, Indiana University Melvin and Bren Simon Cancer Center, Indianapolis, IN, 46202, USA.
Liang ChengDepartment of Pathology and Laboratory Medicine, Indiana University School of Medicine, Indiana University Melvin and Bren Simon Cancer Center, Indianapolis, IN, 46202, USA.
R Graham CooksDepartment of Chemistry, Center for Analytical Instrumentation Development and Purdue University Center for Cancer Research, Purdue University, West Lafayette, IN, 47907, USA. cooks@purdue.edu.
Purdue University West Lafayette · USCenter for Cancer Research · USIndiana University Health · USIndiana University School of Medicine

Funding

Desorption Electrospray Ionization Mass Spectrometry Imaging in Clinical DiagnostR21EB015722 · NIBIB · PURDUE UNIVERSITY · PI COOKS, ROBERT GRAHAM · 2013 to 2014
$388k
NIBIB NIH HHS R21 EB015722
6 · The paper itself

Abstract

Touch spray-mass spectrometry (TS-MS) is an ambient ionization technique (ionization of unprocessed samples in the open air) that may find intraoperative applications in quickly identifying the disease state of cancerous tissues and in defining surgical margins. In this study, TS-MS was performed on fresh kidney tissue (∼1-5 cm(3)), within 1 h of resection, from 21 human subjects afflicted by renal cell carcinoma (RCC). The preliminary diagnostic value of TS-MS data taken from freshly resected tissue was evaluated. Principal component analysis (PCA) of the negative ion mode (m/z 700-1000) data provided the separation between RCC (16 samples) and healthy renal tissue (13 samples). Linear discriminant analysis (LDA) on the PCA-compressed data estimated sensitivity (true positive rate) and specificity (true negative rate) of 98 and 95 %, respectively, based on histopathological evaluation. The results indicate that TS-MS might provide rapid diagnostic information in spite of the complexity of unprocessed kidney tissue and the presence of interferences such as urine and blood. Desorption electrospray ionization-MS imaging (DESI-MSI) in the negative ionization mode was performed on the tissue specimens after TS-MS analysis as a reference method. The DESI imaging experiments provided phospholipid profiles (m/z 700-1000) that also separated RCC and healthy tissue in the PCA space, with PCA-LDA sensitivity and specificity of 100 and 89 %, respectively. The TS and DESI loading plots indicated that different ions contributed most to the separation of RCC from healthy renal tissue (m/z 794 [PC 34:1 + Cl](-) and 844 [PC 38:4 + Cl](-) for TS vs. m/z 788 [PS 36:1 - H](-) and 810 [PS 38:4 - H](-) for DESI), while m/z 885 ([PI 38:4 - H](-)) was important in both TS and DESI. The prospect, remaining hurdles, and future work required for translating TS-MS into a method of intraoperative tissue diagnosis are discussed. Graphical abstract Touch spray-mass spectrometry used for lipid profiling of fresh human renal cell carcinoma. Left) Photograph of the touch spray probe pointed at the MS inlet. Right) Average mass spectra of healthy renal tissue (blue) and RCC (red).

Indexed as

AlgorithmsBiomarkers, TumorCarcinoma, Renal CellDiagnosis, DifferentialHumansKidneyKidney NeoplasmsPhospholipidsReference ValuesReproducibility of ResultsSensitivity and SpecificitySpectrometry, Mass, Electrospray IonizationTumor Cells, CulturedBiomarkers, TumorPhospholipidsCancerDesorption electrospray ionizationMass spectrometryMultivariate statisticsSurgical tissue analysisTouch spray ionization

Identifiers

PMID27206411
PMCPMC4939286
OpenAlexW2395893143

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.