Evidence map›Paper›PMID 27203444›Full record

ArticleMolecular therapy : the journal of the American Society of Gene Therapy2016

Complete Spectrum of CRISPR/Cas9-induced Mutations on HBV cccDNA.

Christoph Seeger, Ji A Sohn

Open access · hybridAbstract read
In one paragraph

Article in Molecular therapy : the journal of the American Society of Gene Therapy, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 79 papers.

0numbers the graph read from it
0cells of the map it votes in
79citing papers in PubMed
10.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

79 citing papers in PubMed, 135 citations in OpenAlex.

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  14. CRISPR/Cas9 for hepatitis B virus infection treatment.Immunity, inflammation and disease · 2023
    Review
  15. Review
  16. Article
  17. Advances in CRISPR therapeutics.Nature reviews. Nephrology · 2023
    Review
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19 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Christoph SeegerInstitute for Cancer Research, Fox Chase Cancer Center, Philadelphia, Pennsylvania, USA.
Ji A SohnInstitute for Cancer Research, Fox Chase Cancer Center, Philadelphia, Pennsylvania, USA.
Fox Chase Cancer Center · US

Funding

WORD PROCESSING CENTER--COREP30CA006927 · NCI · RESEARCH INST OF FOX CHASE CAN CTR · PI Margaret von Mehren · 1985 to 2026
$138.8M
Designer Nucleases to Cure Chronic Hepatitis BR21AI103514 · NIAID · RESEARCH INST OF FOX CHASE CAN CTR · PI SEEGER, CHRISTOPH · 2013 to 2014
$491k
Mechanisms for cccDNA Formation and PersistenceR21AI119433 · NIAID · RESEARCH INST OF FOX CHASE CAN CTR · PI SEEGER, CHRISTOPH · 2015 to 2016
$491k
NCI NIH HHS P30 CA006927NIAID NIH HHS R21 AI103514NIAID NIH HHS R21 AI119433
6 · The paper itself

Abstract

Hepatitis B virus (HBV) causes chronic infections that cannot yet be cured. The virus persists in infected hepatocytes, because covalently closed circular DNA (cccDNA), the template for the transcription of viral RNAs, is stable in nondividing cells. Antiviral therapies with nucleoside analogues inhibit HBV DNA synthesis in capsids in the cytoplasm of infected hepatocytes, but do not destroy nuclear cccDNA. Because over 200 million people are still infected, a cure for chronic hepatitis B (CHB) has become one of the major challenges in antiviral therapy. As a first step toward the development of curative therapies, we previously demonstrated that the CRISPR/Cas9 system can be used to functionally inactivate cccDNA derived from infectious HBV. Moreover, some evidence suggests that certain cytokines might induce an APOBEC-mediated cascade leading to the destruction of cccDNA. In this report we investigated whether a combination of the two mechanisms could act synergistically to inactivate cccDNA. Using next generation sequencing (NGS), we determined the complete spectrum of mutations in cccDNA following Cas9 cleavage and repair by nonhomologous end joining (NHEJ). We found that over 90% of HBV DNA was cleaved by Cas9. In addition our results showed that editing of HBV DNA after Cas9 cleavage is at least 15,000 times more efficient that APOBEC-mediated cytosine deamination following treatment of infected cells with interferon alpha (IFNα). We also found that a previously used method to detect cytosine deaminated DNA, termed 3D-PCR, overestimates the amount and frequency of edited HBV DNA. Taken together, our results demonstrated that the CRISPR/Cas9 system is so far the best method to functionally inactivate HBV cccDNA and provide a cure for CHB.

Indexed as

CRISPR-Cas SystemsDNA, CircularMutationBase SequenceCell LineDNA, ViralGene EditingGenome, ViralHepatitis B virusHigh-Throughput Nucleotide SequencingHumansINDEL MutationMutation RateRNA, Guide, CRISPR-Cas SystemsDNA, CircularDNA, ViralRNA, Guide, CRISPR-Cas Systems

Identifiers

PMID27203444
PMCPMC5088770
OpenAlexW2403531472

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.