Evidence map›Paper›PMID 27203213›Full record

ArticleOncotarget2016

Genetic landscape of T- and NK-cell post-transplant lymphoproliferative disorders.

Elizabeth Margolskee, Vaidehi Jobanputra, Preti Jain, Jinli Chen, Karthik Ganapathi, Odelia Nahum, Brynn Levy, Julie Morscio, Vundavalli Murty, Thomas Tousseyn and 3 more

Open access · diamondAbstract read
In one paragraph

Article in Oncotarget, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
2.8field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 57 citations in OpenAlex.

  1. Review
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  7. EBV-Related Lymphoproliferative Diseases: A Review in Light of New Classifications.Mediterranean journal of hematology and infectious diseases · 2024
    Review
  8. Article
  9. Review
  10. Review
  11. Article
  12. Review
  13. New concepts in EBV-associated B, T, and NK cell lymphoproliferative disorders.Virchows Archiv : an international journal of pathology · 2023
    Review
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  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 2 countries.

Elizabeth MargolskeeDepartment of Pathology and Cell Biology, Columbia University Medical Center, New York, NY, USA.
Vaidehi JobanputraDepartment of Pathology and Cell Biology, Columbia University Medical Center, New York, NY, USA.
Preti JainDepartment of Pathology and Cell Biology, Columbia University Medical Center, New York, NY, USA.
Jinli ChenDepartment of Pathology and Cell Biology, Columbia University Medical Center, New York, NY, USA.
Karthik GanapathiDepartment of Pathology and Cell Biology, Columbia University Medical Center, New York, NY, USA.
Odelia NahumDepartment of Pathology and Cell Biology, Columbia University Medical Center, New York, NY, USA.
Brynn LevyDepartment of Pathology and Cell Biology, Columbia University Medical Center, New York, NY, USA.
Julie MorscioDepartment of Pathology, Translational Cell and Tissue Research Laboratory, UZ Leuven/KU Leuven, Leuven, Belgium.
Vundavalli MurtyDepartment of Pathology and Cell Biology, Columbia University Medical Center, New York, NY, USA.
Thomas TousseynDepartment of Pathology, Translational Cell and Tissue Research Laboratory, UZ Leuven/KU Leuven, Leuven, Belgium.
Bachir AlobeidDepartment of Pathology and Cell Biology, Columbia University Medical Center, New York, NY, USA.
Mahesh MansukhaniDepartment of Pathology and Cell Biology, Columbia University Medical Center, New York, NY, USA.
Govind BhagatDepartment of Pathology and Cell Biology, Columbia University Medical Center, New York, NY, USA.
Columbia University Irving Medical Center · USKU Leuven · BEUniversitair Ziekenhuis Leuven · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Post-transplant lymphoproliferative disorders of T- or NK-cell origin (T/NK-PTLD) are rare entities and their genetic basis is unclear. We performed targeted sequencing of 465 cancer-related genes and high-resolution copy number analysis in 17 T-PTLD and 2 NK-PTLD cases. Overall, 377 variants were detected, with an average of 20 variants per case. Mutations of epigenetic modifier genes (TET2, KMT2C, KMT2D, DNMT3A, ARID1B, ARID2, KDM6B, n=11). and inactivation of TP53 by mutation and/or deletion(n=6) were the most frequent alterations, seen across disease subtypes, followed by mutations of JAK/STAT pathway genes (n=5). Novel variants, including mutations in TBX3 (n=3), MED12 (n=3) and MTOR (n=1), were observed as well. High-level microsatellite instability was seen in 1 of 14 (7%) cases, which had a heterozygous PMS2 mutation. Complex copy number changes were detected in 8 of 16 (50%) cases and disease subtype-specific aberrations were also identified. In contrast to B-cell PTLDs, the molecular and genomic alterations observed in T/NK-PTLD appear similar to those reported for peripheral T-cell lymphomas occurring in immunocompetent hosts, which may suggest common genetic mechanisms of lymphoma development.

Indexed as

AdultAgedAged, 80 and overFemaleHumansKiller Cells, NaturalLymphoproliferative DisordersMaleMiddle AgedT-Lymphocytesgeneticgenomicimmunodeficiencypost-transplant lymphoproliferative disordersT-cell lymphoma

Identifiers

PMID27203213
PMCPMC5122338
OpenAlexW2400770462

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.