ArticleFrontiers in plant science2016
Identification of a Candidate Gene for Panicle Length in Rice (Oryza sativa L.) Via Association and Linkage Analysis.
Article in Frontiers in plant science, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers, 1 of them a synthesis that pooled it.
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29 citing papers in PubMed, 1 synthesis or guideline pooled it.
- Meta-QTLs, ortho-meta-QTLs and candidate genes for grain yield and associated traits in wheat (Triticum aestivum L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022Pooled it
- Genomic regions associated with flag leaf and panicle architecture in rice (Oryza sativa L.).BMC genomics · 2024Article
- Article
- Co-Inoculation of EndophytesPlants (Basel, Switzerland) · 2023Article
- Molecular characterization and expression analysis of theFrontiers in plant science · 2023Article
- Mining the candidate genes of rice panicle traits via a genome-wide association study.Frontiers in genetics · 2023Article
- Characterization ofMolecular breeding : new strategies in plant improvement · 2022Article
- Changes in physiological traits and expression of key genes involved in sugar signaling pathway in rice under high temperature stress.3 Biotech · 2022Article
- Detection of QTLs for Plant Height Architecture Traits in Rice (Plants (Basel, Switzerland) · 2022Article
- Development of an inclusive 580K SNP array and its application for genomic selection and genome-wide association studies in rice.Frontiers in plant science · 2022Article
- Systematic Analysis of NB-ARC Gene Family in Rice and Functional Characterization ofFrontiers in genetics · 2022Article
- Mutation inInternational journal of molecular sciences · 2021Article
- Connecting the dots: from nanodomains to physiological functions of REMORINs.Plant physiology · 2021Review
- Putative LysM Effectors Contribute to Fungal Lifestyle.International journal of molecular sciences · 2021Article
- Panicle-3D: Efficient Phenotyping Tool for Precise Semantic Segmentation of Rice Panicle Point Cloud.Plant phenomics (Washington, D.C.) · 2021Article
- Deep placement of nitrogen fertilizer improves yield, nitrogen use efficiency and economic returns of transplanted fine rice.PloS one · 2021Article
- QTL Mapping and Candidate Gene Analysis for Alkali Tolerance in Japonica Rice at the bud Stage Based on Linkage Mapping and Genome-Wide Association Study.Rice (New York, N.Y.) · 2020Article
- Identification of QTLs for high grain yield and component traits in new plant types of rice.PloS one · 2020Article
- Genome-wide association study of important agronomic traits within a core collection of rice (Oryza sativa L.).BMC plant biology · 2019Article
- Detection of QTL for panicle architecture in FJournal of genetics · 2019Article
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12 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Panicle length (PL) is an important trait for improving panicle architecture and grain yield in rice (Oryza sativa L.). Three populations were used to identify QTLs and candidate genes associated with PL. Four QTLs for PL were detected on chromosomes 4, 6, and 9 through linkage mapping in the recombinant inbred line population derived from a cross between the cultivars Xiushui79 (short panicle) and C-bao (long panicle). Ten SSR markers associated with PL were detected on chromosomes 2, 3, 5, 6, 8, 9, and 10 in the natural population consisting of 540 accessions collected from East and Southeast Asia. A major locus on chromosome 9 with the largest effect was identified via both linkage and association mapping. LONG PANICLE 1 (LP1) locus was delimited to a 90-kb region of the long arm of chromosome 9 through fine mapping using a single segment segregating F2 population. Two single nucleotide polymorphisms (SNPs) leading to amino acid changes were detected in the third and fifth exons of LP1. LP1 encodes a Remorin_C-containing protein of unknown function with homologs in a variety of species. Sequencing analysis of LP1 in two parents and 103 rice accessions indicated that SNP1 is associated with panicle length. The LP1 allele of Xiushui79 leads to reduced panicle length, whereas the allele of C-bao relieves the suppression of panicle length. LP1 and the elite alleles can be used to improve panicle length in rice.
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