Evidence map›Paper›PMID 27200046›Full record

ArticleFrontiers in plant science2016

Comparative Proteomic Analysis of Soybean Leaves and Roots by iTRAQ Provides Insights into Response Mechanisms to Short-Term Salt Stress.

Wei Ji, Ru Cong, Sheng Li, Rui Li, Zhiwei Qin, Yanjun Li, Xiaolin Zhou, Sixue Chen, Jing Li

Abstract read
In one paragraph

Article in Frontiers in plant science, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed.

  1. Review
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  9. Twenty years of mining salt tolerance genes in soybean.Molecular breeding : new strategies in plant improvement · 2023
    Article
  10. Proteomic Approaches to Uncover Salt Stress Response Mechanisms in Crops.International journal of molecular sciences · 2022
    Review
  11. Article
  12. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Wei JiDepartment of Plant Biotechnology, College of Life Science, Northeast Agricultural University Harbin, China.
Ru CongDepartment of Plant Biotechnology, College of Life Science, Northeast Agricultural University Harbin, China.
Sheng LiDepartment of Plant Biotechnology, College of Life Science, Northeast Agricultural University Harbin, China.
Rui LiDepartment of Plant Biotechnology, College of Life Science, Northeast Agricultural University Harbin, China.
Zhiwei QinDepartment of Vegetables, College of Horticulture, Northeast Agricultural University Harbin, China.
Yanjun LiDepartment of Plant Biotechnology, College of Life Science, Northeast Agricultural University Harbin, China.
Xiaolin ZhouDepartment of Plant Biotechnology, College of Life Science, Northeast Agricultural University Harbin, China.
Sixue ChenDepartment of Biology, Genetics Institute, University of FloridaGainesville, FL, USA; Department of Proteomics, Interdisciplinary Center for Biotechnology Research, University of FloridaGainesville, FL, USA.
Jing LiDepartment of Plant Biotechnology, College of Life Science, Northeast Agricultural University Harbin, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Salinity severely threatens land use capability and crop yields worldwide. Understanding the mechanisms that protect soybeans from salt stress will help in the development of salt-stress tolerant leguminous plants. Here we initially analyzed the changes in malondialdehyde levels, the activities of superoxide dismutase and peroxidases, chlorophyll content, and Na(+)/K(+) ratios in leaves and roots from soybean seedlings treated with 200 mM NaCl at different time points. We found that the 200 mM NaCl treated for 12 h was optimal for undertaking a proteomic analysis on soybean seedlings. An iTRAQ-based proteomic approach was used to investigate the proteomes of soybean leaves and roots under salt treatment. These data are available via ProteomeXchange with the identifier PXD002851. In total, 278 and 440 proteins with significantly altered abundances were identified in leaves and roots of soybean, respectively. From these data, a total of 50 proteins were identified in the both tissues. These differentially expressed proteins (DEPs) were from 13 biological processes. Moreover, protein-protein interaction analysis revealed that proteins involved in metabolism, carbohydrate and energy metabolism, protein synthesis and redox homeostasis could be assigned to four high salt stress response networks. Furthermore, semi-quantitative RT-PCR analysis revealed that some of the proteins, such as a 14-3-3, MMK2, PP1, TRX-h, were also regulated by salt stress at the level of transcription. These results indicated that effective regulatory protein expression related to signaling, membrane and transport, stress defense and metabolism all played important roles in the short-term salt response of soybean seedlings.

Indexed as

iTRAQleafNaClquantitative proteomicsrootsoybean

Identifiers

PMID27200046
PMCPMC4850148

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.