Evidence map›Paper›PMID 27200004›Full record

ArticleFrontiers in plant science2016

Soybean Roots Grown under Heat Stress Show Global Changes in Their Transcriptional and Proteomic Profiles.

Oswaldo Valdés-López, Josef Batek, Nicolas Gomez-Hernandez, Cuong T Nguyen, Mariel C Isidra-Arellano, Ning Zhang, Trupti Joshi, Dong Xu, Kim K Hixson, Karl K Weitz and 3 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in plant science, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
11.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 80 citations in OpenAlex.

  1. Article
  2. Epigenomics and Non-Coding RNAs in Soybean Adaptation to Abiotic Stresses.International journal of molecular sciences · 2025
    Review
  3. Comparative Transcriptome Analysis ofInternational journal of molecular sciences · 2025
    Article
  4. Article
  5. Review
  6. Review
  7. Article
  8. Article
  9. Bottom-Up Proteomics: Advancements in Sample Preparation.International journal of molecular sciences · 2023
    Review
  10. Transcriptome Analysis ofInternational journal of molecular sciences · 2023
    Article
  11. Article
  12. Review
  13. Review
  14. Improvement of heat stress tolerance in soybean (Frontiers in plant science · 2022
    Review
  15. Review
  16. International journal of molecular sciences · 2021
    Review
  17. Review
  18. Review
  19. Article
  20. Root Growth Adaptation to Climate Change in Crops.Frontiers in plant science · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 2 countries.

Oswaldo Valdés-LópezDivision of Plant Sciences and Biochemistry, National Center for Soybean Biotechnology, C.S. Bond Life Sciences Center, University of MissouriColumbia, MO, USA; Laboratorio de Genómica Funcional de Leguminosas, FES Iztacala Universidad Nacional Autónoma de MéxicoMéxico, Mexico.
Josef BatekDivision of Plant Sciences and Biochemistry, National Center for Soybean Biotechnology, C.S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA.
Nicolas Gomez-HernandezDivision of Plant Sciences and Biochemistry, National Center for Soybean Biotechnology, C.S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA.
Cuong T NguyenDivision of Plant Sciences and Biochemistry, National Center for Soybean Biotechnology, C.S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA.
Mariel C Isidra-ArellanoLaboratorio de Genómica Funcional de Leguminosas, FES Iztacala Universidad Nacional Autónoma de México México, Mexico.
Ning ZhangC.S. Bond Life Sciences Center, Informatics Institute, University of Missouri Columbia, MO, USA.
Trupti JoshiC.S. Bond Life Sciences Center, Informatics Institute, University of MissouriColumbia, MO, USA; Department of Computer Science, University of MissouriColumbia, MO, USA; Department of Molecular Microbiology and Immunology and Office of Research, School of Medicine, University of MissouriColumbia, MO, USA.
Dong XuC.S. Bond Life Sciences Center, Informatics Institute, University of MissouriColumbia, MO, USA; Department of Computer Science, University of MissouriColumbia, MO, USA.
Kim K HixsonEnvironmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory Richland, WA, USA.
Karl K WeitzEnvironmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory Richland, WA, USA.
Joshua T AldrichEnvironmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory Richland, WA, USA.
Ljiljana Paša-TolićEnvironmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory Richland, WA, USA.
Gary StaceyDivision of Plant Sciences and Biochemistry, National Center for Soybean Biotechnology, C.S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA.
University of Missouri · USEnvironmental Molecular Sciences Laboratory · USUniversidad Nacional Autónoma de México · MXPacific Northwest National Laboratory · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Heat stress is likely to be a key factor in the negative impact of climate change on crop production. Heat stress significantly influences the functions of roots, which provide support, water, and nutrients to other plant organs. Likewise, roots play an important role in the establishment of symbiotic associations with different microorganisms. Despite the physiological relevance of roots, few studies have examined their response to heat stress. In this study, we performed genome-wide transcriptomic and proteomic analyses on isolated root hairs, which are a single, epidermal cell type, and compared their response to stripped roots. On average, we identified 1849 and 3091 genes differentially regulated in root hairs and stripped roots, respectively, in response to heat stress. Our gene regulatory module analysis identified 10 key modules that might control the majority of the transcriptional response to heat stress. We also conducted proteomic analysis on membrane fractions isolated from root hairs and compared these responses to stripped roots. These experiments identified a variety of proteins whose expression changed within 3 h of application of heat stress. Most of these proteins were predicted to play a significant role in thermo-tolerance, as well as in chromatin remodeling and post-transcriptional regulation. The data presented represent an in-depth analysis of the heat stress response of a single cell type in soybean.

Indexed as

gene moduleheat stressproteomicsroot hairssoybeantranscriptomics

Identifiers

PMID27200004
PMCPMC4843095
OpenAlexW2337773938

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.