Evidence map›Paper›PMID 27199962›Full record

ArticleFrontiers in microbiology2016

Transcriptomic Analysis Reveals Adaptive Responses of an Enterobacteriaceae Strain LSJC7 to Arsenic Exposure.

Yingjiao Zhang, Songcan Chen, Xiuli Hao, Jian-Qiang Su, Ximei Xue, Yu Yan, Yong-Guan Zhu, Jun Ye

Open access · goldAbstract read
In one paragraph

Article in Frontiers in microbiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.7field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
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  5. Article
  6. Proteomics and transcriptomic analysis ofCurrent research in microbial sciences · 2021
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  7. Article
  8. Article
  9. Transcriptomic Response Analysis ofFrontiers in microbiology · 2021
    Article
  10. Cellular response of Brevibacterium casei #NIOSBA88 to arsenic and chromium-a proteomic approach.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2020
    Article
  11. Article
  12. Article
  13. Arsenic Response of Three AltiplanicFrontiers in microbiology · 2019
    Article
  14. Transcriptomic Analysis of TwoFrontiers in microbiology · 2019
    Article
  15. Article
  16. Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Yingjiao ZhangKey Lab of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences Xiamen, China.
Songcan ChenState Key Lab of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of SciencesBeijing, China; University of Chinese Academy of SciencesBeijing, China.
Xiuli HaoKey Lab of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences Xiamen, China.
Jian-Qiang SuKey Lab of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences Xiamen, China.
Ximei XueKey Lab of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences Xiamen, China.
Yu YanKey Lab of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences Xiamen, China.
Yong-Guan ZhuKey Lab of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of SciencesXiamen, China; State Key Lab of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of SciencesBeijing, China.
Jun YeKey Lab of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences Xiamen, China.
Chinese Academy of Sciences · CNInstitute of Urban Environment · CNResearch Center for Eco-Environmental Sciences · CNUniversity of Chinese Academy of Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Arsenic (As) resistance determinant ars operon is present in many bacteria and has been demonstrated to enhance As(V) resistance of bacteria. However, whole molecular mechanism adaptations of bacteria in response to As(V) stress remain largely unknown. In this study, transcriptional profiles of Enterobacteriaceae strain LSJC7 responding to As(V) stress were analyzed using RNA-seq and qRT-PCR. As expected, genes involved in As(V) uptake were down-regulated, those involved in As(V) reduction and As(III) efflux were up-regulated, which avoided cellular As accumulation. Reactive oxygen species and nitric oxide (NO) were induced, which caused cellular damages including DNA, protein, and Fe-S cluster damage in LSJC7. The expression of specific genes encoding transcriptional regulators, such as nsrR and soxRS were also induced. NsrR and SoxRS modulated many critical metabolic activities in As(V) stressed LSJC7 cells, including reactive species scavenging and repairing damaged DNA, proteins, and Fe-S clusters. Therefore, besides As uptake, reduction, and efflux; oxidative stress defense and damage repair were the main cellular adaptive responses of LSJC7 to As(V) stress.

Indexed as

arsenicEnterobacteriaceaenitric oxidereactive oxygen speciesRNA-seqtranscriptome

Identifiers

PMID27199962
PMCPMC4852401
OpenAlexW2345390740

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.