Evidence map›Paper›PMID 27199480›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Bacterial β-Kdo glycosyltransferases represent a new glycosyltransferase family (GT99).

Olga G Ovchinnikova, Evan Mallette, Akihiko Koizumi, Todd L Lowary, Matthew S Kimber, Chris Whitfield

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 56 citations in OpenAlex.

  1. O-antigen polysaccharides inMicrobiology and molecular biology reviews : MMBR · 2025
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  6. Review
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  10. Nucleotide Sugars in Chemistry and Biology.Molecules (Basel, Switzerland) · 2020
    Review
  11. Article
  12. Lipopolysaccharide O-antigens-bacterial glycans made to measure.The Journal of biological chemistry · 2020
    Review
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
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  20. Single polysaccharide assembly protein that integrates polymerization, termination, and chain-length quality control.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Olga G OvchinnikovaDepartment of Molecular and Cellular Biology, University of Guelph, Guelph, ON, Canada N1G 2W1;
Evan MalletteDepartment of Molecular and Cellular Biology, University of Guelph, Guelph, ON, Canada N1G 2W1;
Akihiko KoizumiDepartment of Chemistry and Alberta Glycomics Centre, University of Alberta, Edmonton, AB, Canada T6G 2R3.
Todd L LowaryDepartment of Chemistry and Alberta Glycomics Centre, University of Alberta, Edmonton, AB, Canada T6G 2R3.
Matthew S KimberDepartment of Molecular and Cellular Biology, University of Guelph, Guelph, ON, Canada N1G 2W1; mkimber@uoguelph.ca cwhitfie@uoguelph.ca.
Chris WhitfieldDepartment of Molecular and Cellular Biology, University of Guelph, Guelph, ON, Canada N1G 2W1; mkimber@uoguelph.ca cwhitfie@uoguelph.ca.ORCID 0000-0002-5267-7027
University of Guelph · CAUniversity of Alberta · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Kdo (3-deoxy-d-manno-oct-2-ulosonic acid) is an eight-carbon sugar mostly confined to Gram-negative bacteria. It is often involved in attaching surface polysaccharides to their lipid anchors. α-Kdo provides a bridge between lipid A and the core oligosaccharide in all bacterial LPSs, whereas an oligosaccharide of β-Kdo residues links "group 2" capsular polysaccharides to (lyso)phosphatidylglycerol. β-Kdo is also found in a small number of other bacterial polysaccharides. The structure and function of the prototypical cytidine monophosphate-Kdo-dependent α-Kdo glycosyltransferase from LPS assembly is well characterized. In contrast, the β-Kdo counterparts were not identified as glycosyltransferase enzymes by bioinformatics tools and were not represented among the 98 currently recognized glycosyltransferase families in the Carbohydrate-Active Enzymes database. We report the crystallographic structure and function of a prototype β-Kdo GT from WbbB, a modular protein participating in LPS O-antigen synthesis in Raoultella terrigena The β-Kdo GT has dual Rossmann-fold motifs typical of GT-B enzymes, but extensive deletions, insertions, and rearrangements result in a unique architecture that makes it a prototype for a new GT family (GT99). The cytidine monophosphate-binding site in the C-terminal α/β domain closely resembles the corresponding site in bacterial sialyltransferases, suggesting an evolutionary connection that is not immediately evident from the overall fold or sequence similarities.

Indexed as

Carbohydrate ConformationCrystallography, X-RayEnterobacteriaceaeGlycosylationGlycosyltransferasesPhylogenyPolysaccharidesProtein ConformationSugar Acids2-keto-3-deoxyoctonateGlycosyltransferasesPolysaccharidesSugar Acids3-deoxy-D-manno-oct-2-ulosonic acidglycosyltransferaseKdomicrobial glycobiologypolysaccharide

Identifiers

PMID27199480
PMCPMC4896679
OpenAlexW2404417962

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.