Evidence map›Paper›PMID 27199251›Full record

ArticleNature communications2016

Clonal evolution in patients with chronic lymphocytic leukaemia developing resistance to BTK inhibition.

Jan A Burger, Dan A Landau, Amaro Taylor-Weiner, Ivana Bozic, Huidan Zhang, Kristopher Sarosiek, Lili Wang, Chip Stewart, Jean Fan, Julia Hoellenriegel and 31 more

Open access · goldAbstract readCase Reports
In one paragraph

Article in Nature communications, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 201 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
201citing papers in PubMed, 2 pooled it
30.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

201 citing papers in PubMed, 2 syntheses or guidelines pooled it, 341 citations in OpenAlex.

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141 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

41 authors at 8 institutions in 3 countries.

Jan A BurgerDepartment of Leukemia, MD Anderson Cancer Center, Houston, Texas 77030, USA.
Dan A LandauBroad Institute, Cambridge, Massachusetts 02142, USA.
Amaro Taylor-WeinerBroad Institute, Cambridge, Massachusetts 02142, USA.
Ivana BozicDepartment of Mathematics, Program for Evolutionary Dynamics, Harvard University, Cambridge, Massachusetts 02138, USA.
Huidan ZhangDepartment of Physics, School of Engineering and Applied Sciences, Harvard University, Cambridge, Massachusetts 02138, USA.
Kristopher SarosiekDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts 02215, USA.ORCID 0000-0002-4618-5085
Lili WangDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts 02215, USA.
Chip StewartBroad Institute, Cambridge, Massachusetts 02142, USA.
Jean FanCenter for Biomedical Informatics, Harvard Medical School, Boston Massachusetts 02115, USA.ORCID 0000-0002-0212-5451
Julia HoellenriegelDepartment of Leukemia, MD Anderson Cancer Center, Houston, Texas 77030, USA.
Mariela SivinaDepartment of Leukemia, MD Anderson Cancer Center, Houston, Texas 77030, USA.
Adrian M DubucDepartment of Pathology, Brigham and Women's Hospital and Harvard Medical School, Boston, Massachusetts 02115, USA.
Cameron FraserDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts 02215, USA.
Yulong HanBioinspired Engineering and Biomechanics Center, Xi'an Jiaotong University, Xi'an 710049, China.
Shuqiang LiFluidigm Corporation, South San Francisco, California 94080, USA.
Kenneth J LivakFluidigm Corporation, South San Francisco, California 94080, USA.
Lihua ZouBroad Institute, Cambridge, Massachusetts 02142, USA.ORCID 0000-0003-0686-3117
Youzhong WanDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts 02215, USA.
Sergej KonoplevDepartment of Hematopathology, MD Anderson Cancer Center, Houston, Texas 77030, USA.
Carrie SougnezBroad Institute, Cambridge, Massachusetts 02142, USA.
Jennifer R BrownDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts 02215, USA.
Lynne V AbruzzoDepartment of Hematopathology, MD Anderson Cancer Center, Houston, Texas 77030, USA.ORCID 0000-0001-6113-7447
Scott L CarterBroad Institute, Cambridge, Massachusetts 02142, USA.
Michael J KeatingDepartment of Leukemia, MD Anderson Cancer Center, Houston, Texas 77030, USA.
Matthew S DavidsDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts 02215, USA.
William G WierdaDepartment of Leukemia, MD Anderson Cancer Center, Houston, Texas 77030, USA.
Kristian CibulskisBroad Institute, Cambridge, Massachusetts 02142, USA.
Thorsten ZenzNational Center for Tumors and German Cancer Research Center (DKFZ), 69121 Heidelberg, Germany.
Lillian WernerBiostatistics and Computational Biology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Paola Dal CinDepartment of Pathology, Brigham and Women's Hospital and Harvard Medical School, Boston, Massachusetts 02115, USA.
Peter KharchenckoCenter for Biomedical Informatics, Harvard Medical School, Boston Massachusetts 02115, USA.
Donna NeubergBiostatistics and Computational Biology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.ORCID 0000-0003-2566-3145
Hagop KantarjianDepartment of Leukemia, MD Anderson Cancer Center, Houston, Texas 77030, USA.
Eric LanderBroad Institute, Cambridge, Massachusetts 02142, USA.
Stacey GabrielBroad Institute, Cambridge, Massachusetts 02142, USA.
Susan O'BrienDepartment of Leukemia, MD Anderson Cancer Center, Houston, Texas 77030, USA.
Anthony LetaiDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts 02215, USA.
David A WeitzDepartment of Physics, School of Engineering and Applied Sciences, Harvard University, Cambridge, Massachusetts 02138, USA.
Martin A NowakDepartment of Mathematics, Program for Evolutionary Dynamics, Harvard University, Cambridge, Massachusetts 02138, USA.
Gad GetzBroad Institute, Cambridge, Massachusetts 02142, USA.
Catherine J WuBroad Institute, Cambridge, Massachusetts 02142, USA.
Broad Institute · USDana-Farber Cancer Institute · USThe University of Texas MD Anderson Cancer Center · USHarvard University · USBrigham and Women's Hospital · USFluidigm (United States) · USGerman Cancer Research Center · DEXi'an Jiaotong University · CN

Funding

Large Scale Sequencing and Analysis of GenomesU54HG003067 · NHGRI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GABRIEL, STACEY, LANDER, ERIC S · 2004 to 2015
$568.6M
Tumor Evolution and Metastasis ProgramP30CA016672 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Scott Kopetz · 1985 to 2026
$290.8M
ProteomicsP01CA206978 · NCI · DANA-FARBER CANCER INST · PI CARR, STEVEN A · 2016 to 2025
$17.0M
Personal tumor neoantigens for immunity against chronic lymphocytic leukemiaR01CA155010 · NCI · DANA-FARBER CANCER INST · PI Catherine Ju-Ying Wu · 2011 to 2026
$9.6M
ITSC for Leukemia: Novel Molecular Strategies for NCTN: "Individualized" TherapieU10CA180861 · NCI · OHIO STATE UNIVERSITY · PI BLOOMFIELD, CLARA D, MARCUCCI, GUIDO · 2014 to 2018
$3.4M
Statistical methods for analysis of single-cell variabilityR01HL131768 · NHLBI · HARVARD MEDICAL SCHOOL · PI KHARCHENKO, PETER V · 2015 to 2019
$2.4M
(PQD1) lmpact of cytotoxic and targeted therapy on clonal evolution of CLLR01CA184922 · NCI · DANA-FARBER CANCER INST · PI WU, CATHERINE JU-YING · 2014 to 2017
$2.2M
The role of the SF3B1 splicing factor in chronic lymphocytic leukemiaR01HL116452 · NHLBI · DANA-FARBER CANCER INST · PI WU, CATHERINE JU-YING · 2013 to 2017
$2.1M
NCI NIH HHS P01 CA206978NCI NIH HHS P30 CA016672NCI NIH HHS R01 CA155010NCI NIH HHS R01 CA184922NCI NIH HHS U10 CA180861NHGRI NIH HHS U54 HG003067NHLBI NIH HHS R01 HL116452NHLBI NIH HHS R01 HL131768
6 · The paper itself

Abstract

Resistance to the Bruton's tyrosine kinase (BTK) inhibitor ibrutinib has been attributed solely to mutations in BTK and related pathway molecules. Using whole-exome and deep-targeted sequencing, we dissect evolution of ibrutinib resistance in serial samples from five chronic lymphocytic leukaemia patients. In two patients, we detect BTK-C481S mutation or multiple PLCG2 mutations. The other three patients exhibit an expansion of clones harbouring del(8p) with additional driver mutations (EP300, MLL2 and EIF2A), with one patient developing trans-differentiation into CD19-negative histiocytic sarcoma. Using droplet-microfluidic technology and growth kinetic analyses, we demonstrate the presence of ibrutinib-resistant subclones and estimate subclone size before treatment initiation. Haploinsufficiency of TRAIL-R, a consequence of del(8p), results in TRAIL insensitivity, which may contribute to ibrutinib resistance. These findings demonstrate that the ibrutinib therapy favours selection and expansion of rare subclones already present before ibrutinib treatment, and provide insight into the heterogeneity of genetic changes associated with ibrutinib resistance.

Indexed as

Clonal EvolutionAdenineAdultAgammaglobulinaemia Tyrosine KinaseAged, 80 and overApoptosisCell TransdifferentiationDrug Resistance, NeoplasmFemaleHistiocytic SarcomaHumansLeukemia, Lymphocytic, Chronic, B-CellMaleMiddle AgedMutationNeoplasm Recurrence, LocalAdenineAgammaglobulinaemia Tyrosine KinaseBTK protein, humanibrutinibPiperidinesProtein-Tyrosine KinasesPyrazolesPyrimidines

Identifiers

PMID27199251
PMCPMC4876453
OpenAlexW2408036343

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.