Evidence map›Paper›PMID 27198584›Full record

ArticleBiochemistry2016

Inhibiting Hexamer Disassembly of Human UDP-Glucose Dehydrogenase by Photoactivated Amino Acid Cross-Linking.

George Grady, Ashley Thelen, Jaleen Albers, Tong Ju, Jiantao Guo, Joseph J Barycki, Melanie A Simpson

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.5field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Integration of Sugar Metabolism and Proteoglycan Synthesis by UDP-glucose Dehydrogenase.The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society · 2021
    Review
  5. Article
  6. Article
  7. Liver glucose metabolism in humans.Bioscience reports · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

George GradyDepartment of Biochemistry, University of Nebraska , Lincoln, Nebraska 68588-0664, United States.
Ashley ThelenDepartment of Biochemistry, University of Nebraska , Lincoln, Nebraska 68588-0664, United States.
Jaleen AlbersDepartment of Biochemistry, University of Nebraska , Lincoln, Nebraska 68588-0664, United States.
Tong JuDepartment of Chemistry, University of Nebraska , Lincoln, Nebraska 68588-0304, United States.
Jiantao GuoDepartment of Chemistry, University of Nebraska , Lincoln, Nebraska 68588-0304, United States.
Joseph J BaryckiDepartment of Biochemistry, University of Nebraska , Lincoln, Nebraska 68588-0664, United States.
Melanie A SimpsonDepartment of Biochemistry, University of Nebraska , Lincoln, Nebraska 68588-0664, United States.
University of Nebraska–Lincoln · US

Funding

Research Pilot Project ProgramP30GM106397 · NIGMS · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI JOHNSON, KEITH R · 2013 to 2017
$4.9M
Mechanisms of Hyaluronan Signaling and Turnover in Prostate CancerR01CA165574 · NCI · UNIVERSITY OF NEBRASKA LINCOLN · PI SIMPSON, MELANIE A. · 2012 to 2016
$1.6M
Defining aberrant steroid elimination in castration resistant prostate cancerR21CA185993 · NCI · UNIVERSITY OF NEBRASKA LINCOLN · PI BARYCKI, JOSEPH J, SIMPSON, MELANIE A. · 2015 to 2016
$333k
NCI NIH HHS R01 CA165574NCI NIH HHS R21 CA185993NIGMS NIH HHS P30 GM106397
6 · The paper itself

Abstract

The enzyme UDP-glucose dehydrogenase (UGDH) catalyzes the reaction of UDP-glucose to UDP-glucuronate through two successive NAD(+)-dependent oxidation steps. Human UGDH apoprotein is purified as a mixture of dimeric and hexameric species. Addition of substrate and cofactor stabilizes the oligomeric state to primarily the hexameric form. To determine if the dynamic conformations of hUGDH are required for catalytic activity, we used site-specific unnatural amino acid incorporation to facilitate cross-linking of monomeric subunits into predominantly obligate oligomeric species. Optimal cross-linking was achieved by encoding p-benzoyl-l-phenylalanine at position 458, normally a glutamine located within the dimer-dimer interface, and exposing the enzyme to long wavelength ultraviolet (UV) radiation in the presence of substrate and cofactor. Hexameric complexes were purified by gel filtration chromatography and found to contain significant fractions of dimer and trimer (approximately 50%) along with another 10% higher-molecular mass species. The activity of the cross-linked enzyme was reduced by almost 60% relative to that of the un-cross-linked UGDH mutant, and UV exposure had no effect on the activity of the wild-type enzyme. These results support a model for catalysis in which the ability to dissociate the dimer-dimer interface is as important for maximal enzyme function as has been previously shown for the formation of the hexamer.

Indexed as

Cross-Linking ReagentsLightAmino AcidsCatalysisHumansKineticsModels, MolecularOxidation-ReductionPhotochemical ProcessesProtein ConformationProtein MultimerizationUridine Diphosphate GlucoseUridine Diphosphate Glucose DehydrogenaseAmino AcidsCross-Linking ReagentsUridine Diphosphate GlucoseUridine Diphosphate Glucose Dehydrogenase

Identifiers

PMID27198584
PMCPMC4955856
OpenAlexW2406590514

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.