Evidence map›Paper›PMID 27196926›Full record

ArticleToxins2016

Degradation of Swainsonine by the NADP-Dependent Alcohol Dehydrogenase A1R6C3 in Arthrobacter sp. HW08.

Yan Wang, A'guan Zhai, Yanqi Zhang, Kai Qiu, Jianhua Wang, Qinfan Li

Open access · goldAbstract read
In one paragraph

Article in Toxins, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 4 citations in OpenAlex.

  1. Removal of antibiotic thiamphenicol by bacterium Aeromonas hydrophila HS01.World journal of microbiology & biotechnology · 2022
    Article
  2. Effects of EnsilingAnimals : an open access journal from MDPI · 2020
    Article
  3. Biodegradation of persistent environmental pollutants by Arthrobacter sp.Environmental science and pollution research international · 2019
    Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Yan WangCollege of Veterinary Medicine, Northwest A & F University, No. 22 Xinong Road, Yangling 712100, China. wangyan11@nwsuaf.edu.cn.
A'guan ZhaiCollege of Veterinary Medicine, Northwest A & F University, No. 22 Xinong Road, Yangling 712100, China. zhaiaguan@163.com.
Yanqi ZhangCollege of Veterinary Medicine, Northwest A & F University, No. 22 Xinong Road, Yangling 712100, China. zyq411069648@163.com.
Kai QiuHulun Buir Animal Epidemic Prevention and Control Center, Hulun Buir 021000, China. jerry820312@126.com.
Jianhua WangCollege of Veterinary Medicine, Northwest A & F University, No. 22 Xinong Road, Yangling 712100, China. jhwang1948@sina.com.
Qinfan LiCollege of Veterinary Medicine, Northwest A & F University, No. 22 Xinong Road, Yangling 712100, China. liqf1131@163.com.
Northwest A&F University · CNHulunbuir University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Swainsonine is an indolizidine alkaloid that has been found in locoweeds and some fungi. Our previous study demonstrated that Arthrobacter sp. HW08 or its crude enzyme extract could degrade swainsonie efficiently. However, the mechanism of swainsonine degradation in bacteria remains unclear. In this study, we used label-free quantitative proteomics method based on liquid chromatography-electrospray ionization-tandem mass spectrometry to dissect the mechanism of swainsonine biodegradation by Arthrobacter sp. HW08. The results showed that 129 differentially expressed proteins were relevant to swainsonine degradation. These differentially expressed proteins were mostly related to the biological process of metabolism and the molecular function of catalytic activity. Among the 129 differentially expressed proteins, putative sugar phosphate isomerase/epimerase A1R5X7, Acetyl-CoA acetyltransferase A0JZ95, and nicotinamide adenine dinucleotide phosphate (NADP)-dependent alcohol dehydrogenase A1R6C3 were found to contribute to the swainsonine degradation. Notably, NADP-dependent alcohol dehyrodgenase A1R6C3 appeared to play a major role in degrading swainsonine, but not as much as Arthrobacter sp. HW08 did. Collectively, our findings here provide insights to understand the mechanism of swainsonine degradation in bacteria.

Indexed as

Acetyl-CoA C-AcetyltransferaseAlcohol OxidoreductasesArthrobacterBacterial ProteinsRacemases and EpimerasesSwainsonineAcetyl-CoA C-Acetyltransferasealcohol dehydrogenase (NAD(P)+)Alcohol OxidoreductasesBacterial ProteinsRacemases and EpimerasesSwainsoninealcohol dehydrogenaseArthrobacter sp.degradationproteomicsswainsonine

Identifiers

PMID27196926
PMCPMC4885060
OpenAlexW2398267842

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.