Evidence map›Paper›PMID 27196323›Full record

ArticleInvestigative ophthalmology & visual science2016

Sequence and Expression of Complement Factor H Gene Cluster Variants and Their Roles in Age-Related Macular Degeneration Risk.

Anne E Hughes, Stephen Bridgett, Weihua Meng, Mingyao Li, Christine A Curcio, Dwight Stambolian, Declan T Bradley

Open access · goldAbstract read
In one paragraph

Article in Investigative ophthalmology & visual science, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 1 pooled it
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 1 synthesis or guideline pooled it, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Anne E HughesFormerly of Centre for Public Health Queen's University Belfast, Belfast, United Kingdom.
Stephen BridgettCentre for Public Health, Queen's University Belfast, Belfast, United Kingdom.
Weihua MengCentre for Public Health, Queen's University Belfast, Belfast, United Kingdom.
Mingyao LiDepartment of Biostatistics and Epidemiology, University of Pennsylvania, Philadelphia, Pennsylvania, United States.
Christine A CurcioDepartment of Ophthalmology, University of Alabama, Birmingham, Alabama, United States.
Dwight StambolianDepartment of Ophthalmology, University of Pennsylvania, Philadelphia, Pennsylvania, United States.
Declan T BradleyCentre for Public Health, Queen's University Belfast, Belfast, United Kingdom.
Queen's University Belfast · GBUniversity of Pennsylvania · USUniversity of Alabama at Birmingham · US

Funding

Scientific TransparencyP30EY001583 · NEI · UNIVERSITY OF PENNSYLVANIA · PI Qi N Cui · 1985 to 2026
$19.5M
Genetic Epidemiology of Age-Related Macular Degeneration in the Older Order AmishR01EY023164 · NEI · UNIVERSITY OF PENNSYLVANIA · PI PERICAK-VANCE, MARGARET A., STAMBOLIAN, DWIGHT EDWARD · 2013 to 2017
$6.2M
NEI NIH HHS P30 EY001583NEI NIH HHS R01 EY023164
6 · The paper itself

Abstract

purposeTo investigate how potentially functional genetic variants are coinherited on each of four common complement factor H (CFH) and CFH-related gene haplotypes and to measure expression of these genes in eye and liver tissues.

methodsWe sequenced the CFH region in four individuals (one homozygote for each of four common CFH region haplotypes) to identify all genetic variants. We studied associations between the haplotypes and AMD phenotypes in 2157 cases and 1150 controls. We examined RNA-seq profiles in macular and peripheral retina and retinal pigment epithelium/choroid/sclera (RCS) from eight eye donors and three liver samples.

resultsThe haplotypic coinheritance of potentially functional variants (including missense variants, novel splice sites, and the CFHR3-CFHR1 deletion) was described for the four common haplotypes. Expression of the short and long CFH transcripts differed markedly between the retina and liver. We found no expression of any of the five CFH-related genes in the retina or RCS, in contrast to the liver, which is the main source of the circulating proteins.

conclusionsWe identified all genetic variants on common CFH region haplotypes and described their coinheritance. Understanding their functional effects will be key to developing and stratifying AMD therapies. The small scale of our expression study prevented us from investigating the relationships between CFH region haplotypes and their expression, and it will take time and collaboration to develop epidemiologic-scale studies. However, the striking difference between systemic and ocular expression of complement regulators shown in this study suggests important implications for the development of intraocular and systemic treatments.

Indexed as

Gene Expression RegulationChoroidComplement Factor HFemaleGenetic VariationGenotypeHaplotypesHumansMacular DegenerationMaleMiddle AgedRetinal Pigment EpitheliumRNAScleraCFH protein, humanComplement Factor HRNA

Identifiers

PMID27196323
PMCPMC4884056
OpenAlexW2405994756

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.