ArticlePloS one2016
Large-Scale Gene Relocations following an Ancient Genome Triplication Associated with the Diversification of Core Eudicots.
Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.
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Who cites it
20 citing papers in PubMed.
- Distinct evolutionary trajectories of gene duplication modes in 40 diploid cotton genomes.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- Uncovering the genome evolutionary dynamics of the Mediterranean endemic palm Chamaerops humilis.BMC plant biology · 2026Article
- Lonicera caerulea genome reveals molecular mechanisms of freezing tolerance and anthocyanin biosynthesis.Journal of advanced research · 2025Article
- Whole genome sequencing reveals transcriptional and translational elements potentially regulating biotic and abiotic stress responses in cowpea.Scientific reports · 2025Article
- Genome-Wide Identification, Evolutionary Expansion, and Expression Analyses of Aux/IAA Gene Family inBiology · 2025Article
- Molecular mechanisms and genetic regulation of self-incompatibility in flowering plants: implications for crop improvement and evolutionary biology.Plant molecular biology · 2025Review
- Detection of colinear blocks and synteny and evolutionary analyses based on utilization of MCScanX.Nature protocols · 2024Review
- Comparative Analysis Reveals Different Evolutionary Fates and Biological Functions in Wheat Duplicated Genes (Plants (Basel, Switzerland) · 2023Article
- Analyses of Cullin1 homologs reveal functional redundancy in S-RNase-based self-incompatibility and evolutionary relationships in eudicots.The Plant cell · 2023Article
- Characterization of the REVEILLE family in Rosaceae and role of PbLHY in flowering time regulation.BMC genomics · 2023Article
- Diverse evolutionary rates and gene duplication patterns among families of functional olfactory receptor genes in humans.PloS one · 2023Article
- Genes Associated with Biological Nitrogen Fixation Efficiency Identified Using RNA Sequencing in Red Clover (Life (Basel, Switzerland) · 2022Article
- Hormone biosynthesis and metabolism members of 2OGD superfamily are involved in berry development and respond to MeJA and ABA treatment of Vitis vinifera L.BMC plant biology · 2022Article
- Chromosome-level genome assembly of the aquatic plant Nymphoides indica reveals transposable element bursts and NBS-LRR gene family expansion shedding light on its invasiveness.DNA research : an international journal for rapid publication of reports on genes and genomes · 2022Article
- The impacts of allopolyploidization on Methyl-CpG-Binding Domain (MBD) gene family in Brassica napus.BMC plant biology · 2022Article
- Contrasting Patterns of Gene Duplication, Relocation, and Selection Among Human Taste Genes.Evolutionary bioinformatics online · 2021Article
- The Cowpea Kinome: Genomic and Transcriptomic Analysis Under Biotic and Abiotic Stresses.Frontiers in plant science · 2021Article
- Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants.Genome biology · 2019Article
- Different Modes of Gene Duplication Show Divergent Evolutionary Patterns and Contribute Differently to the Expansion of Gene Families Involved in Important Fruit Traits in Pear (Frontiers in plant science · 2018Article
- Phylogenomic Synteny Network Analysis of MADS-Box Transcription Factor Genes Reveals Lineage-Specific Transpositions, Ancient Tandem Duplications, and Deep Positional Conservation.The Plant cell · 2017Article
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5 authors.
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Abstract
Different modes of gene duplication including whole-genome duplication (WGD), and tandem, proximal and dispersed duplications are widespread in angiosperm genomes. Small-scale, stochastic gene relocations and transposed gene duplications are widely accepted to be the primary mechanisms for the creation of dispersed duplicates. However, here we show that most surviving ancient dispersed duplicates in core eudicots originated from large-scale gene relocations within a narrow window of time following a genome triplication (γ) event that occurred in the stem lineage of core eudicots. We name these surviving ancient dispersed duplicates as relocated γ duplicates. In Arabidopsis thaliana, relocated γ, WGD and single-gene duplicates have distinct features with regard to gene functions, essentiality, and protein interactions. Relative to γ duplicates, relocated γ duplicates have higher non-synonymous substitution rates, but comparable levels of expression and regulation divergence. Thus, relocated γ duplicates should be distinguished from WGD and single-gene duplicates for evolutionary investigations. Our results suggest large-scale gene relocations following the γ event were associated with the diversification of core eudicots.
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