Evidence map›Paper›PMID 27194739›Full record

ArticleJournal of experimental botany2016

New insights into the post-translational modification of multiple phosphoenolpyruvate carboxylase isoenzymes by phosphorylation and monoubiquitination during sorghum seed development and germination.

Isabel Ruiz-Ballesta, Guillermo Baena, Jacinto Gandullo, Liqun Wang, Yi-Min She, William Charles Plaxton, Cristina Echevarría

Abstract read
In one paragraph

Article in Journal of experimental botany, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

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  8. Silencing of SbPlants (Basel, Switzerland) · 2023
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  14. Efficient Regulation of COFrontiers in plant science · 2021
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  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Isabel Ruiz-BallestaDepartamento de Biología Vegetal, Facultad de Biología, Universidad de Sevilla, Avda Reina Mercedes nº 6, 41012 Sevilla, Spain.
Guillermo BaenaDepartamento de Biología Vegetal, Facultad de Biología, Universidad de Sevilla, Avda Reina Mercedes nº 6, 41012 Sevilla, Spain.
Jacinto GandulloDepartamento de Biología Vegetal, Facultad de Biología, Universidad de Sevilla, Avda Reina Mercedes nº 6, 41012 Sevilla, Spain.
Liqun WangShanghai Center for Plant Stress Biology, Chinese Academy of Sciences, 3888 Chenhua Road, Shanghai 201602, China State Key Laboratory of Crop Genetics and Germplasm Enhancement, Soybean Research Institute, Nanjing Agricultural University, Nanjing, Jiangsu 210095, China.
Yi-Min SheShanghai Center for Plant Stress Biology, Chinese Academy of Sciences, 3888 Chenhua Road, Shanghai 201602, China.
William Charles PlaxtonDepartment of Biology, Queen's University, Kingston, Ontario K7L 3N6, Canada.
Cristina EchevarríaDepartamento de Biología Vegetal, Facultad de Biología, Universidad de Sevilla, Avda Reina Mercedes nº 6, 41012 Sevilla, Spain echeva@us.es.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Phosphoenolpyruvate carboxylase (PEPC; E.C. 4.1.1.31) was characterized in developing and germinating sorghum seeds, focusing on the transcript and polypeptide abundance of multiple plant-type phosphoenolpyruvate carboxylase (PTPC) genes, and the post-translational modification of each isoenzyme by phosphorylation versus monoubiquitination during germination. We observed high levels of SbPPC4 (Sb07g014960) transcripts during early development (stage I), and extensive transcript abundance of SbPPC2 (Sb02g021090) and SbPPC3 (Sb04g008720) throughout the entire life cycle of the seed. Although tandem mass spectrometry (MS) analysis of immunopurified PTPC indicated that four different PTPC isoenzymes were expressed in the developing and germinating seeds, SbPPC3 was the most abundant isozyme of the developing seed, and of the embryo and the aleurone layer of germinating seeds. In vivo phosphorylation of the different PTPC isoenzymes at their conserved N-terminal seryl phosphorylation site during germination was also established by MS/MS analysis. Furthermore, three of the four isoenzymes were partially monoubiquitinated, with MS/MS pinpointing SbPPC2 and SbPPC3 monoubiquitination at the conserved Lys-630 and Lys-624 residues, respectively. Our results demonstrate that monoubiquitination and phosphorylation simultaneously occur in vivo with different PTPC isozymes during seed germination. In addition, we show that PTPC monoubiquitination in germinating sorghum seeds always increases at stage II (emergence of the radicle), is maintained during the aerobic period of rapid cell division and reserve mobilization, and remains relatively constant until stage IV-V when coleoptiles initiate the formation of the photosynthetic tissues.

Indexed as

GerminationIsoenzymesPhosphoenolpyruvate CarboxylasePhosphorylationPlant ProteinsProtein Processing, Post-TranslationalSeedsSorghumTandem Mass SpectrometryUbiquitinationIsoenzymesPhosphoenolpyruvate CarboxylasePlant ProteinsGerminationmonoubiquitinationphosphoenolpyruvate carboxylasephosphorylationpost-translational modificationsseed developmentseedsSorghum bicolortissue-specific gene expression.

Identifiers

PMID27194739
PMCPMC4892742

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.