Evidence map›Paper›PMID 27194423›Full record

ArticleGene therapy2016

Excision of HIV-1 DNA by gene editing: a proof-of-concept in vivo study.

R Kaminski, R Bella, C Yin, J Otte, P Ferrante, H E Gendelman, H Li, R Booze, J Gordon, W Hu and 1 more

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in Gene therapy, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 112 papers.

0numbers the graph read from it
0cells of the map it votes in
112citing papers in PubMed
16.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

112 citing papers in PubMed, 202 citations in OpenAlex.

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  19. Delivering CRISPR to the HIV-1 reservoirs.Frontiers in microbiology · 2024
    Review
  20. Article

52 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

R KaminskiDepartment of Neuroscience, Center for Neurovirology, Lewis Katz School of Medicine at Temple University, Philadelphia, PA, USA.
R BellaMicrobiology and Clinical Microbiology, Department of Biomedical, Surgical and Dental Sciences, University of Milan, Milan, Italy.
C YinDepartment of Neuroscience, Center for Neurovirology, Lewis Katz School of Medicine at Temple University, Philadelphia, PA, USA.
J OtteDepartment of Neuroscience, Center for Neurovirology, Lewis Katz School of Medicine at Temple University, Philadelphia, PA, USA.
P FerranteMicrobiology and Clinical Microbiology, Department of Biomedical, Surgical and Dental Sciences, University of Milan, Milan, Italy.
H E GendelmanDepartment of Pharmacology and Experimental Neuroscience, University of Nebraska Medical Center, Durham Research Center, Omaha, NE, USA.
H LiBehavioral Neuroscience, Department of Psychology, University of South Carolina, Columbia, SC, USA.
R BoozeBehavioral Neuroscience, Department of Psychology, University of South Carolina, Columbia, SC, USA.
J GordonDepartment of Neuroscience, Center for Neurovirology, Lewis Katz School of Medicine at Temple University, Philadelphia, PA, USA.
W HuDepartment of Neuroscience, Center for Neurovirology, Lewis Katz School of Medicine at Temple University, Philadelphia, PA, USA.
K KhaliliDepartment of Neuroscience, Center for Neurovirology, Lewis Katz School of Medicine at Temple University, Philadelphia, PA, USA.
Temple University · USUniversity of Milan · ITUniversity of South Carolina · USUniversity of Nebraska Medical Center · US

Funding

Viral Gene Editing and Bioinformatics Core for Institution # 269291P30MH092177 · NIMH · TEMPLE UNIV OF THE COMMONWEALTH · PI Ilker Kudret Sariyer · 2011 to 2026
$24.9M
Pharmacokinetics and Drug-Drug InteractionsP01DA028555 · NIDA · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI ALNOUTI, YAZEN · 2010 to 2019
$16.8M
HIV/COCAINE NEUROTOXICITY IN FEMALESR01DA013137 · NIDA · UNIVERSITY OF SOUTH CAROLINA AT COLUMBIA · PI BOOZE, ROSEMARIE M, MACTUTUS, CHARLES F. · 2000 to 2021
$7.7M
Project 3 Dysregulation of metabolic communication of oligodendrocytes and neurons by cocaine and TatP01DA037830 · NIDA · TEMPLE UNIV OF THE COMMONWEALTH · PI KHALILI, KAMEL · 2015 to 2019
$7.4M
Nanomedicine and NeuroAIDSR01NS036126 · NINDS · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI GENDELMAN, HOWARD E · 1997 to 2017
$5.7M
Nebraska Center for VirologyP30GM103509 · NIGMS · UNIVERSITY OF NEBRASKA LINCOLN · PI WOOD, CHARLES · 2012 to 2014
$3.3M
Maternal HIV: Developmental Neurotoxicity - Administrative SupplementR01HD043680 · NICHD · UNIVERSITY OF SOUTH CAROLINA AT COLUMBIA · PI BOOZE, ROSEMARIE M, MACTUTUS, CHARLES F. · 2003 to 2016
$2.8M
Regulation of HIV-1 by Rad51 in CNS cellsR01MH093271 · NIMH · TEMPLE UNIV OF THE COMMONWEALTH · PI KHALILI, KAMEL · 2011 to 2015
$1.9M
Progression of Attentional and Executive Function Deficits in HANDR01MH106392 · NIMH · UNIVERSITY OF SOUTH CAROLINA AT COLUMBIA · PI BOOZE, ROSEMARIE M, MACTUTUS, CHARLES F. · 2016 to 2020
$1.8M
RNA-mediated excision of the HIV-1 genome from latently infected cells in CNSR01NS087971 · NINDS · TEMPLE UNIV OF THE COMMONWEALTH · PI HU, WENHUI, KHALILI, KAMEL · 2014 to 2016
$1.2M
NICHD NIH HHS R01 HD043680NIDA NIH HHS P01 DA028555NIDA NIH HHS P01 DA037830NIDA NIH HHS R01 DA013137NIGMS NIH HHS P30 GM103509NIMH NIH HHS P30 MH092177NIMH NIH HHS R01 MH093271NIMH NIH HHS R01 MH106392NINDS NIH HHS R01 NS036126NINDS NIH HHS R01 NS087971
6 · The paper itself

Abstract

A CRISPR/Cas9 gene editing strategy has been remarkable in excising segments of integrated HIV-1 DNA sequences from the genome of latently infected human cell lines and by introducing InDel mutations, suppressing HIV-1 replication in patient-derived CD4+ T-cells, ex vivo. Here, we employed a short version of the Cas9 endonuclease, saCas9, together with a multiplex of guide RNAs (gRNAs) for targeting the viral DNA sequences within the 5'-LTR and the Gag gene for removing critically important segments of the viral DNA in transgenic mice and rats encompassing the HIV-1 genome. Tail-vein injection of transgenic mice with a recombinant Adeno-associated virus 9 (rAAV9) vector expressing saCas9 and the gRNAs, rAAV:saCas9/gRNA, resulted in the cleavage of integrated HIV-1 DNA and excision of a 978 bp DNA fragment spanning between the LTR and Gag gene in the spleen, liver, heart, lung and kidney as well as in the circulating lymphocytes. Retro-orbital inoculation of rAAV9:saCas9/gRNA in transgenic rats eliminated a targeted segment of viral DNA and substantially decreased the level of viral gene expression in circulating blood lymphocytes. The results from the proof-of-concept studies, for the first time, demonstrate the in vivo eradication of HIV-1 DNA by CRISPR/Cas9 on delivery by an rAAV9 vector in a range of cells and tissues that harbor integrated copies of viral DNA.

Indexed as

CRISPR-Cas SystemsAnimalsCD4-Positive T-LymphocytesCells, CulturedDependovirusDNA, ViralGene EditingGene Products, gagGene TargetingHIV-1KidneyLiverLungMiceMyocardiumRatsDNA, ViralGene Products, gag

Identifiers

PMID27194423
PMCPMC4974122
OpenAlexW2399301073

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.