Evidence map›Paper›PMID 27194011›Full record

ArticleRNA (New York, N.Y.)2016

Time course of large ribosomal subunit assembly in E. coli cells overexpressing a helicase inactive DbpA protein.

Riley C Gentry, Jared J Childs, Jirair Gevorkyan, Yulia V Gerasimova, Eda Koculi

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
0.5field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
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  4. Article
  5. Phase-Specific Antibiotic Resistance Mechanisms in anbioRxiv : the preprint server for biology · 2025
    Article
  6. Article
  7. Article
  8. Substrate Specificities of DDX1: A Human DEAD-box protein.bioRxiv : the preprint server for biology · 2024
    Article
  9. Article
  10. Article
  11. Structural basis for the activation of the DEAD-box RNA helicase DbpA by the nascent ribosome.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  12. Article
  13. Article
  14. Article
  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Riley C GentryDepartment of Chemistry, University of Central Florida, Orlando, Florida 32816, USA.
Jared J ChildsDepartment of Chemistry, University of Central Florida, Orlando, Florida 32816, USA.
Jirair GevorkyanCentral Valley Toxicology, Clovis, California 93611, USA.
Yulia V GerasimovaDepartment of Chemistry, University of Central Florida, Orlando, Florida 32816, USA.
Eda KoculiDepartment of Chemistry, University of Central Florida, Orlando, Florida 32816, USA.
University of Central Florida · USClovis Oncology (United States) · US

Funding

Targeting oncogenic RNAs with antibodiesR21CA175625 · NCI · UNIVERSITY OF CENTRAL FLORIDA · PI KOCULI, EDA · 2014 to 2015
$302k
NCI NIH HHS R21 CA175625
6 · The paper itself

Abstract

DbpA is a DEAD-box RNA helicase implicated in Escherichia coli large ribosomal subunit assembly. Previous studies have shown that when the ATPase and helicase inactive DbpA construct, R331A, is expressed in E. coli cells, a large ribosomal subunit intermediate accumulates. The large subunit intermediate migrates as a 45S particle in a sucrose gradient. Here, using a number of structural and fluorescent assays, we investigate the ribosome profiles of cells lacking wild-type DbpA and overexpressing the R331A DbpA construct. Our data show that in addition to the 45S particle previously described, 27S and 35S particles are also present in the ribosome profiles of cells overexpressing R331A DbpA. The 27S, 35S, and 45S independently convert to the 50S subunit, suggesting that ribosome assembly in the presence of R331A and the absence of wild-type DbpA occurs via multiple pathways.

Indexed as

RibosomesDEAD-box RNA HelicasesEscherichia coliEscherichia coli ProteinsKineticsRNA, BacterialRNA, RibosomaldbpA protein, E coliDEAD-box RNA HelicasesEscherichia coli ProteinsRNA, BacterialRNA, RibosomalDbpADEAD-box proteinribosome assemblyribosome maturation factorRNA helicase

Identifiers

PMID27194011
PMCPMC4911913
OpenAlexW2403424532

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.