Evidence map›Paper›PMID 27193742›Full record

ArticleScientific reports2016

Functional analysis of the N-terminal basic motif of a eukaryotic satellite RNA virus capsid protein in replication and packaging.

Venkatesh Sivanandam, Deborah Mathews, Rees Garmann, Gonca Erdemci-Tandogan, Roya Zandi, A L N Rao

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
6.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Article
  3. Physical virology: From virus self-assembly to particle mechanics.Wiley interdisciplinary reviews. Nanomedicine and nanobiotechnology · 2020
    Review
  4. Article
  5. The different faces of mass action in virus assembly.Journal of biological physics · 2018
    Article
  6. Self consistent field theory of virus assembly.Journal of physics. Condensed matter : an Institute of Physics journal · 2018
    Article
  7. The effect of RNA stiffness on the self-assembly of virus particles.Journal of physics. Condensed matter : an Institute of Physics journal · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Venkatesh SivanandamDepartment of Plant Pathology &Microbiology, University of California, Riverside, CA 92521, USA.
Deborah MathewsDepartment of Plant Pathology &Microbiology, University of California, Riverside, CA 92521, USA.
Rees GarmannDepartment of Chemistry &Biochemistry, University of California, Los Angeles, CA, 90095, USA.
Gonca Erdemci-TandoganDepartment of Physics &Astronomy, University of California, Riverside, CA 92521, USA.
Roya ZandiDepartment of Physics &Astronomy, University of California, Riverside, CA 92521, USA.
A L N RaoDepartment of Plant Pathology &Microbiology, University of California, Riverside, CA 92521, USA.
University of California, Riverside · USUniversity of California, Los Angeles · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Efficient replication and assembly of virus particles are integral to the establishment of infection. In addition to the primary role of the capsid protein (CP) in encapsidating the RNA progeny, experimental evidence on positive sense single-stranded RNA viruses suggests that the CP also regulates RNA synthesis. Here, we demonstrate that replication of Satellite tobacco mosaic virus (STMV) is controlled by the cooperative interaction between STMV CP and the helper virus (HV) Tobacco mosaic virus (TMV) replicase. We identified that the STMV CP-HV replicase interaction requires a positively charged residue at the third position (3R) in the N-terminal 13 amino acid (aa) motif. Far-Northwestern blotting showed that STMV CP promotes binding between HV-replicase and STMV RNA. An STMV CP variant having an arginine to alanine substitution at position 3 in the N-terminal 13aa motif abolished replicase-CP binding. The N-terminal 13aa motif of the CP bearing alanine substitutions for positively charged residues located at positions 5, 7, 10 and 11 are defective in packaging full-length STMV, but can package a truncated STMV RNA lacking the 3' terminal 150 nt region. These findings provide insights into the mechanism underlying the regulation of STMV replication and packaging.

Indexed as

AgrobacteriumAmino Acid MotifsCapsid ProteinsHelper VirusesNicotianaRNA-Dependent RNA PolymeraseRNA, ViralTobacco mosaic satellite virusTobacco Mosaic VirusVirionVirus AssemblyVirus ReplicationCapsid ProteinsRNA-Dependent RNA PolymeraseRNA, Viraltobacco mosaic virus replicase

Identifiers

PMID27193742
PMCPMC4872054
OpenAlexW2402927126

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.