Evidence map›Paper›PMID 27191513›Full record

ArticleJournal of ocular pharmacology and therapeutics : the official journal of the Association for Ocular Pharmacology and Therapeutics2016

Automated Measurement of Cobblestone Morphology for Characterizing Stem Cell Derived Retinal Pigment Epithelial Cell Cultures.

Rohini Joshi, Walter Mankowski, Mark Winter, Janmeet S Saini, Timothy A Blenkinsop, Jeffrey H Stern, Sally Temple, Andrew R Cohen

Abstract read
In one paragraph

Article in Journal of ocular pharmacology and therapeutics : the official journal of the Association for Ocular Pharmacology and Therapeutics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Rohini Joshi1 Department of Electrical and Computer Engineering, Drexel University , Philadelphia, Pennsylvania.
Walter Mankowski1 Department of Electrical and Computer Engineering, Drexel University , Philadelphia, Pennsylvania.
Mark Winter1 Department of Electrical and Computer Engineering, Drexel University , Philadelphia, Pennsylvania.
Janmeet S Saini2 Neural Stem Cell Institute , Rensselaer, New York.
Timothy A Blenkinsop3 Developmental and Regenerative Biology, Mount Sinai Hospital , New York, New York.
Jeffrey H Stern2 Neural Stem Cell Institute , Rensselaer, New York.
Sally Temple2 Neural Stem Cell Institute , Rensselaer, New York.
Andrew R Cohen1 Department of Electrical and Computer Engineering, Drexel University , Philadelphia, Pennsylvania.

Funding

Analyzing Neural Stem Cell Clonal DevelopmentR01NS076709 · NINDS · UNIVERSITY OF WISCONSIN MILWAUKEE · PI COHEN, ANDREW ROBERT · 2011 to 2015
$1.7M
NINDS NIH HHS R01 NS076709
6 · The paper itself

Abstract

purposeAssessing the morphologic properties of cells in microscopy images is an important task to evaluate cell health, identity, and purity. Typically, subjective visual assessments are accomplished by an experienced researcher. This subjective human step makes transfer of the evaluation process from the laboratory to the cell manufacturing facility difficult and time consuming.

methodsAutomated image analysis can provide rapid, objective measurements of cultured cells, greatly aiding manufacturing, regulatory, and research goals. Automated algorithms for classifying images based on appearance characteristics typically either extract features from the image and use those features for classification or use the images directly as input to the classification algorithm. In this study we have developed both feature and nonfeature extraction methods for automatically measuring "cobblestone" structure in human retinal pigment epithelial (RPE) cell cultures.

resultsA new approach using image compression combined with a Kolmogorov complexity-based distance metric enables robust classification of microscopy images of RPE cell cultures. The automated measurements corroborate determinations made by experienced cell biologists. We have also developed an approach for using steerable wavelet filters for extracting features to characterize the individual cellular junctions.

conclusionsTwo image analysis techniques enable robust and accurate characterization of the cobblestone morphology that is indicative of viable RPE cultures for therapeutic applications.

Indexed as

Cell Culture TechniquesCell ShapeAlgorithmsAutomationCells, CulturedEpithelial-Mesenchymal TransitionHumansImage Interpretation, Computer-AssistedPattern Recognition, AutomatedRetinal Pigment EpitheliumStem Cells

Identifiers

PMID27191513
PMCPMC4904233

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.