ArticlePeerJ2016
The genome and transcriptome of Phalaenopsis yield insights into floral organ development and flowering regulation.
Article in PeerJ, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
19 citing papers in PubMed, 44 citations in OpenAlex.
- Orchid genome evolution and trait innovation.Journal of integrative plant biology · 2026Review
- Molecular mechanisms underlying floral trait formation inHorticulture research · 2026Article
- Advancing ornamental plant breeding through genomic technologies: opportunities, challenges, and future directions.Functional & integrative genomics · 2025Review
- Comparative transcriptomics and proteomics analysis of the symbiotic germination ofFrontiers in microbiology · 2024Article
- Combined Transcriptome and Proteome Analysis Provides Insights into Petaloidy in Pomegranate.Plants (Basel, Switzerland) · 2023Article
- Transcriptome Analysis Reveals Endogenous Hormone Changes during Spike Development inInternational journal of molecular sciences · 2022Article
- In-depth analysis of genomes and functional genomics of orchid using cutting-edge high-throughput sequencing.Frontiers in plant science · 2022Review
- Is seasonal flowering time ofAoB PLANTS · 2021Article
- Research advances in and prospects of ornamental plant genomics.Horticulture research · 2021Review
- Plastid phylogenomics resolves ambiguous relationships within the orchid family and provides a solid timeframe for biogeography and macroevolution.Scientific reports · 2021Article
- Progress and Challenges in the Improvement of Ornamental Plants by Genome Editing.Plants (Basel, Switzerland) · 2020Review
- An Overview of Orchid Protocorm-Like Bodies: Mass Propagation, Biotechnology, Molecular Aspects, and Breeding.International journal of molecular sciences · 2020Review
- Evolution and development of three highly specialized floral structures of bee-pollinatedEvoDevo · 2020Article
- De novo sequencing of tree peony (Paeonia suffruticosa) transcriptome to identify critical genes involved in flowering and floral organ development.BMC genomics · 2019Article
- PeERF1, a SHINE-Like Transcription Factor, Is Involved in Nanoridge Development on Lip Epidermis ofFrontiers in plant science · 2019Article
- Floral Induction and Flower Development of Orchids.Frontiers in plant science · 2019Review
- Review
- Recent progress in whole genome sequencing, high-density linkage maps, and genomic databases of ornamental plants.Breeding science · 2018Review
- Transcriptome-Wide Identification and Expression Analysis of DIVARICATA- and RADIALIS-Like Genes of the Mediterranean Orchid Orchis italica.Genome biology and evolution · 2017Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
13 authors at 3 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The Phalaenopsis orchid is an important potted flower of high economic value around the world. We report the 3.1 Gb draft genome assembly of an important winter flowering Phalaenopsis 'KHM190' cultivar. We generated 89.5 Gb RNA-seq and 113 million sRNA-seq reads to use these data to identify 41,153 protein-coding genes and 188 miRNA families. We also generated a draft genome for Phalaenopsis pulcherrima 'B8802,' a summer flowering species, via resequencing. Comparison of genome data between the two Phalaenopsis cultivars allowed the identification of 691,532 single-nucleotide polymorphisms. In this study, we reveal that the key role of PhAGL6b in the regulation of labellum organ development involves alternative splicing in the big lip mutant. Petal or sepal overexpressing PhAGL6b leads to the conversion into a lip-like structure. We also discovered that the gibberellin pathway that regulates the expression of flowering time genes during the reproductive phase change is induced by cool temperature. Our work thus depicted a valuable resource for the flowering control, flower architecture development, and breeding of the Phalaenopsis orchids.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.