Evidence map›Paper›PMID 27190185›Full record

ArticleThe Journal of infectious diseases2016

Genital Anaerobic Bacterial Overgrowth and the PrePex Male Circumcision Device, Rakai, Uganda.

Cindy M Liu, Jessica L Prodger, Aaron A R Tobian, David Serwadda, Ronald M Galiwango, Fred Nalugoda, Nehemiah Kighoma, Joshua Mwinike, Margaret Anyokorit, Lance B Price and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of infectious diseases, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.9field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 11 citations in OpenAlex.

  1. Trial
  2. Article
  3. Article
  4. Article
  5. Review
  6. Ockham's Razor and the PrePex Male Circumcision Device.The Journal of infectious diseases · 2016
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 2 countries.

Cindy M LiuDepartment of Pathology, School of Medicine Center for Microbial Genetics and Genomics, Northern Arizona University Division of Pathogen Genomics, Translational Genomics Research Institute, Flagstaff, Arizona.
Jessica L ProdgerDepartment of Epidemiology, Bloomberg School of Public Health, Johns Hopkins University, Baltimore, Maryland.
Aaron A R TobianDepartment of Pathology, School of Medicine Department of Epidemiology, Bloomberg School of Public Health, Johns Hopkins University, Baltimore, Maryland Rakai Health Sciences Program, Entebbe, Uganda.
David SerwaddaRakai Health Sciences Program, Entebbe, Uganda.
Ronald M GaliwangoRakai Health Sciences Program, Entebbe, Uganda.
Fred NalugodaRakai Health Sciences Program, Entebbe, Uganda.
Nehemiah KighomaRakai Health Sciences Program, Entebbe, Uganda.
Joshua MwinikeRakai Health Sciences Program, Entebbe, Uganda.
Margaret AnyokoritRakai Health Sciences Program, Entebbe, Uganda.
Lance B PriceDivision of Pathogen Genomics, Translational Genomics Research Institute, Flagstaff, Arizona Department of Environmental and Occupational Health, Milken Institute School of Public Health, George Washington University.
Maria J WawerDepartment of Epidemiology, Bloomberg School of Public Health, Johns Hopkins University, Baltimore, Maryland Rakai Health Sciences Program, Entebbe, Uganda.
Godfrey KigoziRakai Health Sciences Program, Entebbe, Uganda.
Ronald H GrayDepartment of Epidemiology, Bloomberg School of Public Health, Johns Hopkins University, Baltimore, Maryland Rakai Health Sciences Program, Entebbe, Uganda.
Rakai Health Sciences Program · UGJohns Hopkins University · USGeorge Washington University · USNorthern Arizona University · US

Funding

Genital Anaerobes, Inflammation and HIV Risk; RakaiR01AI087409 · NIAID · JOHNS HOPKINS UNIVERSITY · PI GRAY, RONALD H, PRICE, LANCE BRADLEY · 2010 to 2012
$2.5M
Oncogenic HPV, Mucosal Immune Response and Risk of HIV AcquisitionK23AI093152 · NIAID · JOHNS HOPKINS UNIVERSITY · PI TOBIAN, AARON A · 2011 to 2015
$684k
NIAID NIH HHS K23 AI093152NIAID NIH HHS R01 AI087409
6 · The paper itself

Abstract

The PrePex circumcision device causes ischemic necrosis of the foreskin, raising concerns of anaerobic overgrowth. We compared the subpreputial microbiome of 2 men 7 days after PrePex device placement to that of 145 uncircumcised men in Rakai, Uganda, using 16S ribosomal (rRNA) RNA gene-based quantitative polymerase chain reaction analysis and sequencing. PrePex users had higher absolute abundance of all bacteria than uncircumcised men (P = .001), largely due to increased numbers of the following anaerobes: Porphyromonas (5.2 × 10(7) 16S rRNA gene copies/swab in the PrePex group and 1.1 × 10(6) 16S rRNA gene copies/swab in uncircumcised men; P = .002), Peptoniphilus (1.0 × 10(7) and 1.8 × 10(6) 16S rRNA gene copies/swab, respectively; P < .05), Anaerococcus (1.0 × 10(7) and 1.1 × 10(6) 16S rRNA gene copies/swab, respectively; P < .001), and Campylobacter ureolyticus (1.7 × 10(5) and 1.6 × 10(7)16S rRNA gene copies/swab, respectively; P < .001). The PrePex-associated increase in anaerobes may account for unpleasant odor and a possible heightened risk of tetanus.

Indexed as

Equipment and SuppliesMicrobiotaAdolescentAdultBacteria, AnaerobicBacterial LoadCircumcision, MaleDNA, BacterialDNA, RibosomalHumansMalePenisReal-Time Polymerase Chain ReactionRNA, Ribosomal, 16SSequence Analysis, DNAUgandaDNA, BacterialDNA, RibosomalRNA, Ribosomal, 16Sanaerobesmale circumcisionpenile microbiotaPrePex devicetetanusUganda

Identifiers

PMID27190185
PMCPMC4957438
OpenAlexW2381859148

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.