ArticleGenome biology and evolution2016
Genus-Wide Comparative Genome Analyses of Colletotrichum Species Reveal Specific Gene Family Losses and Gains during Adaptation to Specific Infection Lifestyles.
Article in Genome biology and evolution, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.
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44 citing papers in PubMed, 98 citations in OpenAlex.
- Dynamic shifts in plant-microbe relationships.Plant biotechnology (Tokyo, Japan) · 2025Article
- Revealing Diversity in NRPS Gene Clusters Across Six Pathogenic Colletotrichum Species.Current microbiology · 2025Article
- Phylogenomics and adaptive evolution of the Colletotrichum gloeosporioides species complex.Communications biology · 2025Article
- Uncovering the Host Range-Lifestyle Relationship in the Endophytic and Anthracnose Pathogenic GenusMicroorganisms · 2025Review
- Comparative Genomics Reveals Sources of Genetic Variability in the Asexual Fungal Plant Pathogen Colletotrichum lupini.Molecular plant pathology · 2024Article
- Regulatory mechanisms of acetic acid, ethanol and high temperature tolerances of acetic acid bacteria during vinegar production.Microbial cell factories · 2024Review
- Comparative Genomic Analyses ofJournal of fungi (Basel, Switzerland) · 2024Article
- Evolutionary history of the cytochrome P450s from Colletotrichum species and prediction of their putative functional roles during host-pathogen interactions.BMC genomics · 2024Article
- Genome evolution and transcriptome plasticity is associated with adaptation to monocot and dicot plants in Colletotrichum fungi.GigaScience · 2024Article
- Transcriptome analysis ofFrontiers in plant science · 2024Article
- What lies behind the large genome ofFrontiers in fungal biology · 2024Article
- Comparative Genomic Analysis ofJournal of fungi (Basel, Switzerland) · 2023Article
- Large-scale genomic analyses with machine learning uncover predictive patterns associated with fungal phytopathogenic lifestyles and traits.Scientific reports · 2023Article
- Updating species diversity ofStudies in mycology · 2022Article
- specificity: an R package for analysis of feature specificity to environmental and higher dimensional variables, applied to microbiome species data.Environmental microbiome · 2022Article
- Comparative Genomics of ThreeFrontiers in microbiology · 2022Article
- Temperature requirements ofFrontiers in plant science · 2022Article
- Identification and Comparison ofPathogens (Basel, Switzerland) · 2021Article
- Article
- Virulence Traits and Population Genomics of the Black YeastJournal of fungi (Basel, Switzerland) · 2021Article
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Authors and funding
7 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Members from Colletotrichum genus adopt a diverse range of lifestyles during infection of plants and represent a group of agriculturally devastating pathogens. In this study, we present the draft genome of Colletotrichum incanum from the spaethianum clade of Colletotrichum and the comparative analyses with five other Colletotrichum species from distinct lineages. We show that the C. incanum strain, originally isolated from Japanese daikon radish, is able to infect both eudicot plants, such as certain ecotypes of the eudicot Arabidopsis, and monocot plants, such as lily. Being closely related to Colletotrichum species both in the graminicola clade, whose members are restricted strictly to monocot hosts, and to the destructivum clade, whose members are mostly associated with dicot infections, C. incanum provides an interesting model system for comparative genomics to study how fungal pathogens adapt to monocot and dicot hosts. Genus-wide comparative genome analyses reveal that Colletotrichum species have tailored profiles of their carbohydrate-degrading enzymes according to their infection lifestyles. In addition, we show evidence that positive selection acting on secreted and nuclear localized proteins that are highly conserved may be important in adaptation to specific hosts or ecological niches.
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