Evidence map›Paper›PMID 27189947›Full record

ArticleThe Journal of biological chemistry2016

Structure-based Epitope Mapping of Mycobacterium tuberculosis Secretary Antigen MTC28.

Prasun Kundu, Rupam Biswas, Somnath Mukherjee, Linda Reinhard, Anirudha Dutta, Jochen Mueller-Dieckmann, Manfred S Weiss, Nishit Kumar Pal, Amit Kumar Das

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Prasun KunduDepartment of Biotechnology, Indian Institute of Technology Kharagpur, West Bengal 721302, India.
Rupam BiswasDepartment of Biotechnology, Indian Institute of Technology Kharagpur, West Bengal 721302, India.
Somnath MukherjeeDepartment of Biotechnology, Indian Institute of Technology Kharagpur, West Bengal 721302, India.
Linda ReinhardDepartment of Cell and Molecular Biology, Karolinska Institutet, 17177 Stockholm, Sweden,; Röntgen-Ångström-Cluster, Karolinska Institutet Outstation, Centre for Structural Systems Biology, c/o DESY, D-22607 Hamburg, Germany,; European Molecular Biology Laboratory, Hamburg Unit, 22603 Hamburg, Germany.
Anirudha DuttaDepartment of Biotechnology, Indian Institute of Technology Kharagpur, West Bengal 721302, India.
Jochen Mueller-DieckmannAbteilung für Mikrobiologie und Biotechnologie, Biozentrum Klein Flottbek, Universität Hamburg, Ohnhorststraße18, 22609 Hamburg, Germany.
Manfred S WeissMacromolecular Crystallography (HZB-MX), Helmholtz-Zentrum Berlin für Materialien und Energie, D-12489 Berlin, Germany.
Nishit Kumar PalNil Ratan Sirkar Medical College and Hospital,138 AJC Bose Road, Sealdah, Raja Bazar, Kolkata, West Bengal 700014, India.
Amit Kumar DasDepartment of Biotechnology, Indian Institute of Technology Kharagpur, West Bengal 721302, India,. Electronic address: amitk@hijli.iitkgp.ernet.in.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Secretary proteins of Mycobacterium tuberculosis are key players of the mycobacterial infection pathway. MTC28 is a 28-kDa proline-rich secretary antigen of Mycobacterium tuberculosis and is only conserved in pathogenic strains of mycobacteria. Here we report the crystal structure of MTC28 at 2.8- and 2.15-Å resolutions for the structure-based epitope design. MTC28 shares a "mog1p"-fold consisting of seven antiparallel β strands stacked between α helices. Five probable epitopes have been located on a solvent-accessible flexible region by computational analysis of the structure of MTC28. Simultaneously, the protein is digested with trypsin and the resulting fragments are purified by HPLC. Such 10 purified peptide fragments are screened against sera from patients infected with pulmonary tuberculosis (PTB). Two of these 10 fragments, namely (127)ALDITLPMPPR(137) and (138)WTQVPDPNVPDAFVVIADR(156),are found to be major immunogenic epitopes that are localized on the outer surface of the protein molecule and are part of a single continuous epitope that have been predicted in silico Mutagenesis and antibody inhibition studies are in accordance with the results obtained from epitope mapping.

Indexed as

Epitope MappingAmino Acid SequenceAntigens, BacterialBacterial ProteinsCircular DichroismEnzyme-Linked Immunosorbent AssayMolecular Dynamics SimulationMycobacterium tuberculosisProtein ConformationAntigens, BacterialBacterial ProteinsMTC28 protein, Mycobacterium tuberculosisantigencrystal structureepitope mappinghigh-performance liquid chromatography (HPLC)Mycobacterium tuberculosis

Identifiers

PMID27189947
PMCPMC4933155

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.