Evidence map›Paper›PMID 27189173›Full record

ArticleBMC biotechnology2016

Novel strong promoter of antimicrobial peptides gene pro-SmAMP2 from chickweed (Stellaria media).

Roman A Komakhin, Denis A Vysotskii, Rahim R Shukurov, Vera D Voblikova, Vera V Komakhina, Svetlana R Strelnikova, Ekaterina M Vetchinkina, Alexey V Babakov

Open access · goldAbstract read
In one paragraph

Article in BMC biotechnology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
17.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 61 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Roman A KomakhinAll-Russia Research Institute of Agricultural Biotechnology, Timiriazevskaya 42, 127550, Moscow, Russia. recombination@iab.ac.ru.
Denis A VysotskiiAll-Russia Research Institute of Agricultural Biotechnology, Timiriazevskaya 42, 127550, Moscow, Russia.
Rahim R ShukurovIBC Generium LLC, Vladimirskaya 14, 601125, Volginsky, Russia.
Vera D VoblikovaAll-Russia Research Institute of Agricultural Biotechnology, Timiriazevskaya 42, 127550, Moscow, Russia.
Vera V KomakhinaAll-Russia Research Institute of Agricultural Biotechnology, Timiriazevskaya 42, 127550, Moscow, Russia.
Svetlana R StrelnikovaAll-Russia Research Institute of Agricultural Biotechnology, Timiriazevskaya 42, 127550, Moscow, Russia.
Ekaterina M VetchinkinaAll-Russia Research Institute of Agricultural Biotechnology, Timiriazevskaya 42, 127550, Moscow, Russia.
Alexey V BabakovAll-Russia Research Institute of Agricultural Biotechnology, Timiriazevskaya 42, 127550, Moscow, Russia.
All-Russian Scientific Research Institute of Food Biotechnology · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundIn a previous study we found that in chickweed the expression level of the pro-SmAMP2 gene was comparable or even higher to that of the β-actin gene. This high level of the gene expression has attracted our attention as an opportunity for the identification of novel strong promoters of plant origin, which could find its application in plant biotechnology. Therefore, in the present study we focused on the nucleotide sequence identification and the functional characteristics of the pro-SmAMP2 promoter in transgenic plants.

resultsIn chickweed (Stellaria media), a 2120 bp promoter region of the pro-SmAMP2 gene encoding antifungal peptides was sequenced. Six 5'-deletion variants -2120, -1504, -1149, -822, -455, and -290 bp of pro-SmAMP2 gene promoter were fused with the coding region of the reporter gene gusA in the plant expression vector pCambia1381Z. Independent transgenic plants of tobacco Nicotiana tabacum were obtained with each genetic structure. GUS protein activity assay in extracts from transgenic plants showed that all deletion variants of the promoter, except -290 bp, expressed the gusA gene. In most transgenic plants, the GUS activity level was comparable or higher than in plants with the viral promoter CaMV 35S. GUS activity remains high in progenies and its level correlates positively with the amount of gusA gene mRNA in T3 homozygous plants. The activity of the рro-SmAMP2 promoter was detected in all organs of the transgenic plants studied, during meiosis and in pollen as well.

conclusionOur results show that the рro-SmAMP2 promoter can be used for target genes expression control in transgenic plants.

Indexed as

Antimicrobial Cationic PeptidesBase SequenceGene Expression Regulation, PlantMolecular Sequence DataPlant ProteinsPlants, Genetically ModifiedPromoter Regions, GeneticStellariaAntimicrobial Cationic PeptidesPlant ProteinsExpression controlNicotiana tabacumPromoterpro-SmAMP2Stellaria mediaTransgenic plants

Identifiers

PMID27189173
PMCPMC4870781
OpenAlexW2408071402

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.