Evidence map›Paper›PMID 27188529›Full record

ArticleMolecular biology and evolution2016

Positive Selection on a Regulatory Insertion-Deletion Polymorphism in FADS2 Influences Apparent Endogenous Synthesis of Arachidonic Acid.

Kumar S D Kothapalli, Kaixiong Ye, Maithili S Gadgil, Susan E Carlson, Kimberly O O'Brien, Ji Yao Zhang, Hui Gyu Park, Kinsley Ojukwu, James Zou, Stephanie S Hyon and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in Molecular biology and evolution, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed
11.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed, 107 citations in OpenAlex.

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  7. Recipient plasma metabolomics as a predictor of heart transplant severe primary graft dysfunction.American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons · 2026
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 2 countries.

Kumar S D KothapalliDivision of Nutritional Sciences, Cornell University jtb4@cornell.edu;ksk25@cornell.edu;ak735@cornell.edu.
Kaixiong YeDepartment of Biological Statistics and Computational Biology, Cornell University.
Maithili S GadgilDepartment of Biotechnology, Sinhgad College of Engineering, University of Pune, Pune, India.
Susan E CarlsonDepartment of Dietetics and Nutrition, The University of Kansas.
Kimberly O O'BrienDivision of Nutritional Sciences, Cornell University.
Ji Yao ZhangDivision of Nutritional Sciences, Cornell University.
Hui Gyu ParkDivision of Nutritional Sciences, Cornell University.
Kinsley OjukwuDivision of Nutritional Sciences, Cornell University.
James ZouDivision of Nutritional Sciences, Cornell University.
Stephanie S HyonDivision of Nutritional Sciences, Cornell University.
Kalpana S JoshiDepartment of Biotechnology, Sinhgad College of Engineering, University of Pune, Pune, India.
Zhenglong GuDivision of Nutritional Sciences, Cornell University.
Alon KeinanDepartment of Biological Statistics and Computational Biology, Cornell University jtb4@cornell.edu;ksk25@cornell.edu;ak735@cornell.edu.
J Thomas BrennaDivision of Nutritional Sciences, Cornell University jtb4@cornell.edu;ksk25@cornell.edu;ak735@cornell.edu.
Cornell University · USSavitribai Phule Pune University · INUniversity of Kansas · US

Funding

DHA Supplementation and Pregnancy OutcomeR01HD047315 · NICHD · UNIVERSITY OF KANSAS MEDICAL CENTER · PI CARLSON, SUSAN E, COLOMBO, JOHN A. · 2006 to 2016
$4.9M
Population Genetic Consequences of Recent Explosive Population Growth in HumansR01GM108805 · NIGMS · CORNELL UNIVERSITY · PI CLARK, ANDREW G, KEINAN, ALON · 2014 to 2017
$2.2M
Molecular mechanism of omega-3 responseR01AT007003 · NCCIH · UNIVERSITY OF TEXAS AT AUSTIN · PI BRENNA, JAMES T. · 2013 to 2017
$1.9M
NCCIH NIH HHS R01 AT007003NICHD NIH HHS R01 HD047315NIGMS NIH HHS R01 GM108805
6 · The paper itself

Abstract

Long chain polyunsaturated fatty acids (LCPUFA) are bioactive components of membrane phospholipids and serve as substrates for signaling molecules. LCPUFA can be obtained directly from animal foods or synthesized endogenously from 18 carbon precursors via the FADS2 coded enzyme. Vegans rely almost exclusively on endogenous synthesis to generate LCPUFA and we hypothesized that an adaptive genetic polymorphism would confer advantage. The rs66698963 polymorphism, a 22-bp insertion-deletion within FADS2, is associated with basal FADS1 expression, and coordinated induction of FADS1 and FADS2 in vitro. Here, we determined rs66698963 genotype frequencies from 234 individuals of a primarily vegetarian Indian population and 311 individuals from the US. A much higher I/I genotype frequency was found in Indians (68%) than in the US (18%). Analysis using 1000 Genomes Project data confirmed our observation, revealing a global I/I genotype of 70% in South Asians, 53% in Africans, 29% in East Asians, and 17% in Europeans. Tests based on population divergence, site frequency spectrum, and long-range haplotype consistently point to positive selection encompassing rs66698963 in South Asian, African, and some East Asian populations. Basal plasma phospholipid arachidonic acid (ARA) status was 8% greater in I/I compared with D/D individuals. The biochemical pathway product-precursor difference, ARA minus linoleic acid, was 31% and 13% greater for I/I and I/D compared with D/D, respectively. This study is consistent with previous in vitro data suggesting that the insertion allele enhances n-6 LCPUFA synthesis and may confer an adaptive advantage in South Asians because of the traditional plant-based diet practice.

Indexed as

Selection, GeneticAdultAllelesArachidonic AcidDatabases, Nucleic AcidDelta-5 Fatty Acid DesaturaseFatty Acid DesaturasesFatty Acids, UnsaturatedFemaleGene FrequencyGenetic VariationHaplotypesHumansINDEL MutationMalePhospholipidsArachidonic AcidDelta-5 Fatty Acid DesaturaseFADS1 protein, humanFADS2 protein, humanFatty Acid DesaturasesFatty Acids, UnsaturatedPhospholipidsarachidonic acidfatty acid desaturasesindel (insertion–deletion)long chain polyunsaturated fatty acidspopulation divergence.positive selection

Identifiers

PMID27188529
PMCPMC4915354
OpenAlexW2317934215

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.