Evidence map›Paper›PMID 27187466›Full record

ArticleToxins2016

The Draft Genome Sequence of the Yersinia entomophaga Entomopathogenic Type Strain MH96T.

Mark R H Hurst, Amy Beattie, Eric Altermann, Roger M Moraga, Lincoln A Harper, Joanne Calder, Aurelie Laugraud

Open access · goldAbstract read
In one paragraph

Article in Toxins, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
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  7. First isolation ofNew microbes and new infections · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Mark R H HurstAgResearch, Farm Systems & Environment, Lincoln Research Centre, Christchurch 8140, New Zealand. mark.hurst@agresearch.co.nz.
Amy BeattieAgResearch, Farm Systems & Environment, Lincoln Research Centre, Christchurch 8140, New Zealand. amy.beattie@agresearch.co.nz.
Eric AltermannAgResearch Limited, Rumen Microbiology, Palmerston North 4474, New Zealand. eric.altermann@agresearch.co.nz.
Roger M MoragaAgResearch Limited, Bioinformatics & Statistics, Hamilton 3214, New Zealand. roger.moraga@agresearch.co.nz.
Lincoln A HarperAgResearch, Farm Systems & Environment, Lincoln Research Centre, Christchurch 8140, New Zealand. elphonso66@hotmail.com.
Joanne CalderAgResearch, Farm Systems & Environment, Lincoln Research Centre, Christchurch 8140, New Zealand. j.calder@middleton.school.nz.
Aurelie LaugraudAgResearch Limited, Bioinformatics & Statistics, Lincoln Research Centre, Christchurch 8140, New Zealand. aurelie.laugraud@agresearch.co.nz.
AgResearch · NZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Here we report the draft genome of Yersinia entomophaga type strain MH96T. The genome shows 93.8% nucleotide sequence identity to that of Yersinia nurmii type strain APN3a-cT, and comprises a single chromosome of approximately 4,275,531 bp. In silico analysis identified that, in addition to the previously documented Y. entomophaga Yen-TC gene cluster, the genome encodes a diverse array of toxins, including two type III secretion systems, and five rhs-associated gene clusters. As well as these multicomponent systems, several orthologs of known insect toxins, such as VIP2 toxin and the binary toxin PirAB, and distant orthologs of some mammalian toxins, including repeats-in-toxin, a cytolethal distending toxin, hemolysin-like genes and an adenylate cyclase were identified. The genome also contains a large number of hypothetical proteins and orthologs of known effector proteins, such as LopT, as well as genes encoding a wide range of proteolytic determinants, including metalloproteases and pathogen fitness determinants, such as genes involved in iron metabolism. The bioinformatic data derived from the current in silico analysis, along with previous information on the pathobiology of Y. entomophaga against its insect hosts, suggests that a number of these virulence systems are required for survival in the hemocoel and incapacitation of the insect host.

Indexed as

Genome, BacterialBacterial ProteinsComputational BiologyComputer SimulationDNA, BacterialVirulenceYersiniaBacterial ProteinsDNA, Bacterialentomopathogengenome sequenceRhsYersinia entomophagaYersinia nurmiiYersinia ruckeri

Identifiers

PMID27187466
PMCPMC4885058
OpenAlexW2390145897

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.