Evidence map›Paper›PMID 27187213›Full record

ArticleNature communications2016

Giraffe genome sequence reveals clues to its unique morphology and physiology.

Morris Agaba, Edson Ishengoma, Webb C Miller, Barbara C McGrath, Chelsea N Hudson, Oscar C Bedoya Reina, Aakrosh Ratan, Rico Burhans, Rayan Chikhi, Paul Medvedev and 6 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 69 citations in OpenAlex.

  1. Article
  2. Review
  3. Life inside a bag: multiomics insights into the bagworm species Eumeta crameri.DNA research : an international journal for rapid publication of reports on genes and genomes · 2025
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  4. Article
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  6. The cardiovascular challenges in giraffes.Journal of muscle research and cell motility · 2023
    Article
  7. Article
  8. Genome sequencing ofFrontiers in plant science · 2023
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Genomics of Adaptations in Ungulates.Animals : an open access journal from MDPI · 2021
    Review
  15. Article
  16. Review
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 4 institutions in 3 countries.

Morris AgabaSchool of Life Sciences and Bioengineering, African Institute of Science and Technology, Arusha 4222, Tanzania.
Edson IshengomaSchool of Life Sciences and Bioengineering, African Institute of Science and Technology, Arusha 4222, Tanzania.
Webb C MillerCenter for Genomics and Bioinformatics, Department of Biology, Huck Institutes of the Life Sciences, Pennsylvania State University, University Park, Pennsylvania 16802, USA.
Barbara C McGrathCenter for Genomics and Bioinformatics, Department of Biology, Huck Institutes of the Life Sciences, Pennsylvania State University, University Park, Pennsylvania 16802, USA.
Chelsea N HudsonCenter for Genomics and Bioinformatics, Department of Biology, Huck Institutes of the Life Sciences, Pennsylvania State University, University Park, Pennsylvania 16802, USA.
Oscar C Bedoya ReinaCenter for Genomics and Bioinformatics, Department of Biology, Huck Institutes of the Life Sciences, Pennsylvania State University, University Park, Pennsylvania 16802, USA.
Aakrosh RatanCenter for Genomics and Bioinformatics, Department of Biology, Huck Institutes of the Life Sciences, Pennsylvania State University, University Park, Pennsylvania 16802, USA.
Rico BurhansCenter for Genomics and Bioinformatics, Department of Biology, Huck Institutes of the Life Sciences, Pennsylvania State University, University Park, Pennsylvania 16802, USA.
Rayan ChikhiCenter for Genomics and Bioinformatics, Department of Computer Science and Engineering, Huck Institutes of the Life Sciences, Pennsylvania State University, University Park, Pennsylvania 16802, USA.
Paul MedvedevCenter for Genomics and Bioinformatics, Department of Computer Science and Engineering, Huck Institutes of the Life Sciences, Pennsylvania State University, University Park, Pennsylvania 16802, USA.
Craig A PraulHuck Institutes of the Life Sciences, Pennsylvania State University, University Park, Pennsylvania 16802, USA.
Lan Wu-CavenerCenter for Genomics and Bioinformatics, Department of Biology, Huck Institutes of the Life Sciences, Pennsylvania State University, University Park, Pennsylvania 16802, USA.
Brendan WoodCenter for Genomics and Bioinformatics, Department of Biology, Huck Institutes of the Life Sciences, Pennsylvania State University, University Park, Pennsylvania 16802, USA.
Heather RobertsonNashville Zoo at Grassmere, Nashville, Tennessee 37211, USA.
Linda PenfoldWhite Oak Holdings, Yulee, Florida 32097, USA.
Douglas R CavenerSchool of Life Sciences and Bioengineering, African Institute of Science and Technology, Arusha 4222, Tanzania.
Pennsylvania State University · USNelson Mandela African Institution of Science and Technology · TZGenomics (United Kingdom) · GBUniversity School of Nashville · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The origins of giraffe's imposing stature and associated cardiovascular adaptations are unknown. Okapi, which lacks these unique features, is giraffe's closest relative and provides a useful comparison, to identify genetic variation underlying giraffe's long neck and cardiovascular system. The genomes of giraffe and okapi were sequenced, and through comparative analyses genes and pathways were identified that exhibit unique genetic changes and likely contribute to giraffe's unique features. Some of these genes are in the HOX, NOTCH and FGF signalling pathways, which regulate both skeletal and cardiovascular development, suggesting that giraffe's stature and cardiovascular adaptations evolved in parallel through changes in a small number of genes. Mitochondrial metabolism and volatile fatty acids transport genes are also evolutionarily diverged in giraffe and may be related to its unusual diet that includes toxic plants. Unexpectedly, substantial evolutionary changes have occurred in giraffe and okapi in double-strand break repair and centrosome functions.

Indexed as

GenomeAdaptation, PhysiologicalAmino Acid SequenceAmino Acid SubstitutionAnimalsBase SequenceBiological EvolutionBone DevelopmentCluster AnalysisGene OntologyGene Regulatory NetworksGenetic VariationGiraffesSequence Analysis, DNA

Identifiers

PMID27187213
PMCPMC4873664
OpenAlexW2400668397

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.