ArticlePloS one2016
Nested Association Mapping of Stem Rust Resistance in Wheat Using Genotyping by Sequencing.
Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers, 1 of them a synthesis that pooled it.
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Who cites it
56 citing papers in PubMed, 1 synthesis or guideline pooled it, 118 citations in OpenAlex.
- Meta-QTLs for multiple disease resistance involving three rusts in common wheat (Triticum aestivum L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022Pooled it
- An IRAT109 NAM population: Genetic characterization and mapping utility for trait dissection in japonica rice (Oryza sativa L.).The plant genome · 2026Article
- A comprehensive SPET-based linkage mapping for berry texture and defective seed development in grapevine.Frontiers in plant science · 2026Article
- MAGIC populations: a next-generation framework for dissecting complex quantitative traits and accelerating molecular breeding in crops.Frontiers in plant science · 2026Review
- Nested association mapping in oat (Avena sativa L.) identifies the location of multiple genes conferring resistance to the crown rust pathogen Puccinia coronata f. sp. avenae.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Article
- Enhancing salinity tolerance in barley: harnessing introgressed nested genomes from the wild ancestor Hordeum spontaneum.BMC plant biology · 2025Article
- Drought-tolerant wheat for enhancing global food security.Functional & integrative genomics · 2024Review
- Identification of Quantitative Trait Loci Associated with Plant Adaptation Traits Using Nested Association Mapping Population.Plants (Basel, Switzerland) · 2024Article
- A new winter wheat genetic resource harbors untapped diversity from synthetic hexaploid wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Article
- The genetics of Ug99 stem rust resistance in spring wheat variety 'Linkert'.Frontiers in plant science · 2024Article
- Identification of Candidate QTLs and Genes for Ear Diameter by Multi-Parent Population in Maize.Genes · 2023Article
- Genetic architecture of protein and oil content in soybean seed and meal.The plant genome · 2023Article
- High-Density Linkage Maps from Japanese RicePlants (Basel, Switzerland) · 2023Article
- Genome-wide association study as a powerful tool for dissecting competitive traits in legumes.Frontiers in plant science · 2023Review
- Defence-related metabolic changes in wheat (Frontiers in plant science · 2023Article
- Genetic mapping of powdery mildew resistance genes in wheat landrace Guizi 1 via genotyping by sequencing.Molecular biology reports · 2022Article
- Discovery of Resistance Genes in Rye by Targeted Long-Read Sequencing and Association Genetics.Cells · 2022Article
- QTL detection for bread wheat processing quality in a nested association mapping population of semi-wild and domesticated wheat varieties.BMC plant biology · 2022Article
- Dynamic regulation of phenylpropanoid pathway metabolites in modulating sorghum defense against fall armyworm.Frontiers in plant science · 2022Article
- An IBD-based mixed model approach for QTL mapping in multiparental populations.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021Article
Corrections and comments
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Authors and funding
7 authors at 5 institutions in 3 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
We combined the recently developed genotyping by sequencing (GBS) method with joint mapping (also known as nested association mapping) to dissect and understand the genetic architecture controlling stem rust resistance in wheat (Triticum aestivum). Ten stem rust resistant wheat varieties were crossed to the susceptible line LMPG-6 to generate F6 recombinant inbred lines. The recombinant inbred line populations were phenotyped in Kenya, South Africa, and St. Paul, Minnesota, USA. By joint mapping of the 10 populations, we identified 59 minor and medium-effect QTL (explained phenotypic variance range of 1% - 20%) on 20 chromosomes that contributed towards adult plant resistance to North American Pgt races as well as the highly virulent Ug99 race group. Fifteen of the 59 QTL were detected in multiple environments. No epistatic relationship was detected among the QTL. While these numerous small- to medium-effect QTL are shared among the families, the founder parents were found to have different allelic effects for the QTL. Fourteen QTL identified by joint mapping were also detected in single-population mapping. As these QTL were mapped using SNP markers with known locations on the physical chromosomes, the genomic regions identified with QTL could be explored more in depth to discover candidate genes for stem rust resistance. The use of GBS-derived de novo SNPs in mapping resistance to stem rust shown in this study could be used as a model to conduct similar marker-trait association studies in other plant species.
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