Evidence map›Paper›PMID 27185875›Full record

ArticleMolecular and cellular biology2016

Brg1 Enables Rapid Growth of the Early Embryo by Suppressing Genes That Regulate Apoptosis and Cell Growth Arrest.

Ajeet P Singh, Julie F Foley, Mark Rubino, Michael C Boyle, Arpit Tandon, Ruchir Shah, Trevor K Archer

Open access · bronzeAbstract read
In one paragraph

Article in Molecular and cellular biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 39 citations in OpenAlex.

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  13. The Role of BRG1 in Antioxidant and Redox Signaling.Oxidative medicine and cellular longevity · 2020
    Review
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  19. Article
  20. Differential Impacts of Alternative Splicing Networks on Apoptosis.International journal of molecular sciences · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Ajeet P SinghChromatin & Gene Expression Section, Epigenetics & Stem Cell Biology Laboratory, NIEHS, NIH, Research Triangle Park, North Carolina, USA.
Julie F FoleySpecial Techniques Group, Cellular & Molecular Pathology Branch, NIEHS, NIH, Research Triangle Park, North Carolina, USA.
Mark RubinoChromatin & Gene Expression Section, Epigenetics & Stem Cell Biology Laboratory, NIEHS, NIH, Research Triangle Park, North Carolina, USA.
Michael C BoyleChromatin & Gene Expression Section, Epigenetics & Stem Cell Biology Laboratory, NIEHS, NIH, Research Triangle Park, North Carolina, USA.
Arpit TandonSciome LLC, Research Triangle Park, North Carolina, USA.
Ruchir ShahSciome LLC, Research Triangle Park, North Carolina, USA.
Trevor K ArcherChromatin & Gene Expression Section, Epigenetics & Stem Cell Biology Laboratory, NIEHS, NIH, Research Triangle Park, North Carolina, USA archer1@niehs.nih.gov.
National Institute of Environmental Health Sciences · USResearch Triangle Park Foundation · USTriangle · US

Funding

Transcriptional Functions of Nuclear Receptors in Cancer CellsZIAES071006 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI ARCHER, TREVOR KEITH · 2009 to 2025
$58.0M
Gene Expression and MicroarraysZICES102445 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI GERRISH, KEVIN · 2009 to 2025
$31.6M
Transcriptional Functions of Nuclear Receptors in Cancer CellsZ01ES071006 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI ARCHER, TREVOR KEITH · 1999 to 2008
$6.9M
Intramural NIH HHS Z01 ES071006
6 · The paper itself

Abstract

SWI/SNF (switching/sucrose nonfermenting)-dependent chromatin remodeling establishes coordinated gene expression programs during development, yet important functional details remain to be elucidated. We show that the Brg1 (Brahma-related gene 1; Smarca4) ATPase is globally expressed at high levels during postimplantation development and its conditional ablation, beginning at gastrulation, results in increased apoptosis, growth retardation, and, ultimately, embryonic death. Global gene expression analysis revealed that genes upregulated in Rosa26CreERT2; Brg1(flox/flox) embryos (here referred to as Brg1(d/d) embryos to describe embryos with deletion of the Brg1(flox/flox) alleles) negatively regulate cell cycle progression and cell growth. In addition, the p53 (Trp53) protein, which is virtually undetectable in early wild-type embryos, accumulated in the Brg1(d/d) embryos and activated the p53-dependent pathways. Using P19 cells, we show that Brg1 and CHD4 (chromodomain helicase DNA binding protein 4) coordinate to control target gene expression. Both proteins physically interact and show a substantial overlap of binding sites at chromatin-accessible regions adjacent to genes differentially expressed in the Brg1(d/d) embryos. Specifically, Brg1 deficiency results in reduced levels of the repressive histone H3 lysine K27 trimethylation (H3K27me3) histone mark and an increase in the amount of open chromatin at the regulatory region of the p53 and p21 (Cdkn1a) genes. These results provide insights into the mechanisms by which Brg1 functions, which is in part via the p53 program, to constrain gene expression and facilitate rapid embryonic growth.

Indexed as

Cell Cycle CheckpointsEmbryonic DevelopmentAnimalsApoptosisCell ProliferationDNA HelicasesGene Expression ProfilingGene Expression Regulation, DevelopmentalMiceMice, KnockoutNuclear ProteinsProteinsSignal TransductionTranscription FactorsTumor Suppressor Protein p53DNA HelicasesMi-2beta protein, mouseNuclear ProteinsProteinsSmarca4 protein, mouseTranscription FactorsTumor Suppressor Protein p53

Identifiers

PMID27185875
PMCPMC4946428
OpenAlexW2395537487

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.