Evidence map›Paper›PMID 27185415›Full record

ArticleScientific reports2016

A systems biology pipeline identifies new immune and disease related molecular signatures and networks in human cells during microgravity exposure.

Sayak Mukhopadhyay, Rohini Saha, Anbarasi Palanisamy, Madhurima Ghosh, Anupriya Biswas, Saheli Roy, Arijit Pal, Kathakali Sarkar, Sangram Bagh

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 29 citations in OpenAlex.

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  4. Omics Studies of Tumor Cells under Microgravity Conditions.International journal of molecular sciences · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Sayak MukhopadhyayBiophysics and Structural Genomics Division, Saha Institute of Nuclear Physics, Kolkata, 700064, India.
Rohini SahaBiophysics and Structural Genomics Division, Saha Institute of Nuclear Physics, Kolkata, 700064, India.
Anbarasi PalanisamyBiophysics and Structural Genomics Division, Saha Institute of Nuclear Physics, Kolkata, 700064, India.
Madhurima GhoshBiophysics and Structural Genomics Division, Saha Institute of Nuclear Physics, Kolkata, 700064, India.
Anupriya BiswasDepartment of Biological Sciences, Presidency University, Kolkata, 700073, India.
Saheli RoyDepartment of Biological Sciences, Presidency University, Kolkata, 700073, India.
Arijit PalBiophysics and Structural Genomics Division, Saha Institute of Nuclear Physics, Kolkata, 700064, India.
Kathakali SarkarBiophysics and Structural Genomics Division, Saha Institute of Nuclear Physics, Kolkata, 700064, India.
Sangram BaghBiophysics and Structural Genomics Division, Saha Institute of Nuclear Physics, Kolkata, 700064, India.
Saha Institute of Nuclear Physics · INPresidency University · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Microgravity is a prominent health hazard for astronauts, yet we understand little about its effect at the molecular systems level. In this study, we have integrated a set of systems-biology tools and databases and have analysed more than 8000 molecular pathways on published global gene expression datasets of human cells in microgravity. Hundreds of new pathways have been identified with statistical confidence for each dataset and despite the difference in cell types and experiments, around 100 of the new pathways are appeared common across the datasets. They are related to reduced inflammation, autoimmunity, diabetes and asthma. We have identified downregulation of NfκB pathway via Notch1 signalling as new pathway for reduced immunity in microgravity. Induction of few cancer types including liver cancer and leukaemia and increased drug response to cancer in microgravity are also found. Increase in olfactory signal transduction is also identified. Genes, based on their expression pattern, are clustered and mathematically stable clusters are identified. The network mapping of genes within a cluster indicates the plausible functional connections in microgravity. This pipeline gives a new systems level picture of human cells under microgravity, generates testable hypothesis and may help estimating risk and developing medicine for space missions.

Indexed as

Gene ExpressionGene Regulatory NetworksWeightlessnessAsthmaAutoimmunityDatabases, GeneticDiabetes MellitusGene Expression RegulationHumansInflammationNeoplasmsNF-kappa BReceptor, Notch1Signal TransductionSystems BiologyNF-kappa BNOTCH1 protein, humanReceptor, Notch1

Identifiers

PMID27185415
PMCPMC4868995
OpenAlexW2403126097

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.