Evidence map›Paper›PMID 27184921›Full record

ArticleBiological psychiatry2016

DNA Methylation Signatures of Early Childhood Malnutrition Associated With Impairments in Attention and Cognition.

Cyril J Peter, Laura K Fischer, Marija Kundakovic, Paras Garg, Mira Jakovcevski, Aslihan Dincer, Ana C Amaral, Edward I Ginns, Marzena Galdzicka, Cyralene P Bryce and 10 more

Open access · bronzeAbstract read
In one paragraph

Article in Biological psychiatry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 79 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
79citing papers in PubMed, 3 pooled it
32.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

79 citing papers in PubMed, 3 syntheses or guidelines pooled it, 155 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Trial
  5. Review
  6. Article
  7. Article
  8. Review
  9. Article
  10. Review
  11. Review
  12. Review
  13. Article
  14. Review
  15. Article
  16. Non-coding 886 (Epigenetics · 2024
    Review
  17. Review
  18. Review
  19. Article
  20. Article

19 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

20 authors at 10 institutions in 4 countries.

Cyril J PeterDepartment of Psychiatry, Icahn School of Medicine at Mount Sinai, New York, New York.
Laura K FischerThe Chester M. Pierce, MD Division of Global Psychiatry, Massachusetts General Hospital, Harvard Medical School, Charlestown, Massachusetts.
Marija KundakovicDepartment of Psychiatry, Icahn School of Medicine at Mount Sinai, New York, New York.
Paras GargDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, New York.
Mira JakovcevskiDepartment of Psychiatry, Icahn School of Medicine at Mount Sinai, New York, New York; Max Planck Institute for Psychiatry, Munich, Germany.
Aslihan DincerDepartment of Psychiatry, Icahn School of Medicine at Mount Sinai, New York, New York; Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, New York.
Ana C AmaralDepartment of Neurology, Massachusetts General Hospital, Harvard Medical School, Charlestown, Massachusetts.
Edward I GinnsDepartment of Psychiatry, University of Massachusetts Medical School, Shrewsbury, Massachusetts; Department of Neurology, University of Massachusetts Medical School, Shrewsbury, Massachusetts; Department of Clinical Pathology, University of Massachusetts Medical School, Shrewsbury, Massachusetts.
Marzena GaldzickaDepartment of Pathology, University of Massachusetts Medical School, Shrewsbury, Massachusetts.
Cyralene P BryceBarbados Nutrition Study, Bridgetown, Barbados.
Chana RatnerDepartment of Psychiatry, Icahn School of Medicine at Mount Sinai, New York, New York.
Deborah P WaberBoston Children's Hospital and Harvard Medical School, Boston, Massachusetts.
David MoklerDepartment of Biomedical Sciences, College of Osteopathic Medicine, University of New England, Biddeford, Maine.
Gayle MedfordBarbados Nutrition Study, Bridgetown, Barbados.
Frances A ChampagneDepartment of Psychology, Columbia University, New York, New York.
Douglas L RoseneDepartment of Anatomy and Neurobiology, Boston University School of Medicine, Boston, Massachusetts.
Jill A McGaughyDepartment of Psychology, University of New Hampshire, Durham, New Hampshire.
Andrew J SharpDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, New York.
Janina R GallerThe Chester M. Pierce, MD Division of Global Psychiatry, Massachusetts General Hospital, Harvard Medical School, Charlestown, Massachusetts.
Schahram AkbarianDepartment of Psychiatry, Icahn School of Medicine at Mount Sinai, New York, New York. Electronic address: schahram.akbarian@mssm.edu.
Icahn School of Medicine at Mount Sinai · USHarvard University · USBarbados Community College · BBUniversity of Massachusetts Chan Medical School · USBoston Children's Hospital · USBoston University · USColumbia University · USMax Planck Institute of Psychiatry · DEUniversity of New England · USUniversity of New Hampshire · US

Funding

REPRESSIVE HISTONE AND DNA METHYLATION IN RODENT DEPRESSION MODELSP50MH096890 · NIMH · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI TAMMINGA, CAROL A · 2012 to 2021
$20.2M
Transgenerational Effects of Undernutrition on ChildrenR01HD060986 · NICHD · MASSACHUSETTS GENERAL HOSPITAL · PI GALLER, JANINA R. · 2011 to 2015
$4.9M
Epigenetic Determinants of Major Depression: a Monozygotic Discordant TwinStudyR01MH097018 · NIMH · UNIVERSITY OF FLORIDA · PI SHARP, ANDREW JAMES, STRACHAN, ERIC DANIEL · 2013 to 2017
$3.3M
Comprehensive identification of parent of origin effects in human and mouseR01HG006696 · NHGRI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI SHARP, ANDREW JAMES · 2012 to 2016
$2.5M
Multigenerational Epigenetic Effects of Cannabis ExposureR01DA033660 · NIDA · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI HURD, YASMIN L. · 2012 to 2016
$2.3M
Remodeling Neuronal Chromatin in Mouse Models for DepressionR01MH086509 · NIMH · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI AKBARIAN, SCHAHRAM · 2010 to 2014
$2.0M
Transforming Genomics with 5 PB Big Omics Data Engine Cray CS300-AC SupercomputerS10OD018522 · OD · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI KOVATCH, PATRICIA · 2014 to 2014
$1.9M
Malnutrition and Mental Health: A Rat ModelR01MH074811 · NIMH · JUDGE BAKER CHILDREN'S CENTER · PI GALLER, JANINA R. · 2007 to 2011
$1.9M
Dopaminergic Epigenomes from Human BrainR21NS076958 · NINDS · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI AKBARIAN, SCHAHRAM, BANNON, MICHAEL J · 2012 to 2013
$460k
Genome-wide analyses of parent of origin effects in three human diseaR03HD073731 · NICHD · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI SHARP, ANDREW JAMES · 2013 to 2014
$167k
NHGRI NIH HHS R01 HG006696NICHD NIH HHS R01 HD060986NICHD NIH HHS R03 HD073731NIDA NIH HHS R01 DA033660NIH HHS S10 OD018522NIMH NIH HHS P50 MH096890NIMH NIH HHS R01 MH074811NIMH NIH HHS R01 MH086509NIMH NIH HHS R01 MH097018NINDS NIH HHS R21 NS076958
6 · The paper itself

Abstract

backgroundEarly childhood malnutrition affects 113 million children worldwide, impacting health and increasing vulnerability for cognitive and behavioral disorders later in life. Molecular signatures after childhood malnutrition, including the potential for intergenerational transmission, remain unexplored.

methodsWe surveyed blood DNA methylomes (~483,000 individual CpG sites) in 168 subjects across two generations, including 50 generation 1 individuals hospitalized during the first year of life for moderate to severe protein-energy malnutrition, then followed up to 48 years in the Barbados Nutrition Study. Attention deficits and cognitive performance were evaluated with the Connors Adult Attention Rating Scale and Wechsler Abbreviated Scale of Intelligence. Expression of nutrition-sensitive genes was explored by quantitative reverse transcriptase polymerase chain reaction in rat prefrontal cortex.

resultsWe identified 134 nutrition-sensitive, differentially methylated genomic regions, with most (87%) specific for generation 1. Multiple neuropsychiatric risk genes, including COMT, IFNG, MIR200B, SYNGAP1, and VIPR2 showed associations of specific methyl-CpGs with attention and IQ. IFNG expression was decreased in prefrontal cortex of rats showing attention deficits after developmental malnutrition.

conclusionsEarly childhood malnutrition entails long-lasting epigenetic signatures associated with liability for attention and cognition, and limited potential for intergenerational transmission.

Indexed as

Behavior, AnimalDNA MethylationEpigenesis, GeneticAdolescentAdultAnimalsAttention Deficit Disorder with HyperactivityBarbadosCognitive DysfunctionDisease Models, AnimalFollow-Up StudiesHumansInfantMiddle AgedNutrition SurveysPrefrontal CortexAttention deficitsChildhood malnutritionCognitionDNA methylationEpigeneticsPrefrontal cortex

Identifiers

PMID27184921
PMCPMC5036982
OpenAlexW2310438434

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.