Evidence map›Paper›PMID 27183575›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2016

Preferential Use of Public TCR during Autoimmune Encephalomyelitis.

Yunqian Zhao, Phuong Nguyen, Jing Ma, Tianhua Wu, Lindsay L Jones, Deqing Pei, Cheng Cheng, Terrence L Geiger

Abstract read
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed.

  1. T-cell receptor repertoires as potential diagnostic markers for patients with COVID-19.International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases · 2021
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  11. Activation pathways that drive CD4Immunological reviews · 2022
    Review
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  18. Review
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  20. Determinants governing T cell receptor α/β-chain pairing in repertoire formation of identical twins.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Yunqian ZhaoDepartment of Pathology, St. Jude Children's Research Hospital, Memphis, TN 38105; and.
Phuong NguyenDepartment of Pathology, St. Jude Children's Research Hospital, Memphis, TN 38105; and.
Jing MaDepartment of Pathology, St. Jude Children's Research Hospital, Memphis, TN 38105; and.
Tianhua WuDepartment of Pathology, St. Jude Children's Research Hospital, Memphis, TN 38105; and.ORCID 0000-0002-6324-4788
Lindsay L JonesDepartment of Pathology, St. Jude Children's Research Hospital, Memphis, TN 38105; and.
Deqing PeiDepartment of Biostatistics, St. Jude Children's Research Hospital, Memphis, TN 38105.
Cheng ChengDepartment of Biostatistics, St. Jude Children's Research Hospital, Memphis, TN 38105.
Terrence L GeigerDepartment of Pathology, St. Jude Children's Research Hospital, Memphis, TN 38105; and terrence.geiger@stjude.org.ORCID 0000-0001-8290-5732

Funding

Viral Vector Technology (VVTSR)P30CA021765 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI CHARLES ROBERTS · 1985 to 2026
$166.9M
TREATMENT OF AUTOIMMUNITY WITH REGULATORY T LYMPHOCYTESR01AI056153 · NIAID · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI GEIGER, TERRENCE L · 2004 to 2013
$3.9M
Lineage Specific Effects of IL10 In AutoimmunityR56AI106600 · NIAID · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI GEIGER, TERRENCE L · 2013 to 2013
$411k
NCI NIH HHS P30 CA021765NIAID NIH HHS R01 AI056153NIAID NIH HHS R56 AI106600
6 · The paper itself

Abstract

How the TCR repertoire, in concert with risk-associated MHC, imposes susceptibility for autoimmune diseases is incompletely resolved. Due largely to recombinatorial biases, a small fraction of TCRα or β-chains are shared by most individuals, or public. If public TCR chains modulate a TCRαβ heterodimer's likelihood of productively engaging autoantigen, because they are pervasive and often high frequency, they could also broadly influence disease risk and progression. Prior data, using low-resolution techniques, have identified the heavy use of select public TCR in some autoimmune models. In this study, we assess public repertoire representation in mice with experimental autoimmune encephalomyelitis at high resolution. Saturation sequencing was used to identify >18 × 10(6) TCRβ sequences from the CNSs, periphery, and thymi of mice at different stages of autoimmune encephalomyelitis and healthy controls. Analyses indicated the prominent representation of a highly diverse public TCRβ repertoire in the disease response. Preferential formation of public TCR implicated in autoimmunity was identified in preselection thymocytes, and, consistently, public, disease-associated TCRβ were observed to be commonly oligoclonal. Increased TCR sharing and a focusing of the public TCR response was seen with disease progression. Critically, comparisons of peripheral and CNS repertoires and repertoires from preimmune and diseased mice demonstrated that public TCR were preferentially deployed relative to nonshared, or private, sequences. Our findings implicate public TCR in skewing repertoire response during autoimmunity and suggest that subsets of public TCR sequences may serve as disease-specific biomarkers or influence disease susceptibility or progression.

Indexed as

Amino Acid SequenceAnimalsCD8-Positive T-LymphocytesCentral Nervous SystemEncephalomyelitis, Autoimmune, ExperimentalFemaleMiceMice, Inbred C57BLMyelin SheathReceptors, Antigen, T-Cell, alpha-betaThymocytesThymus GlandReceptors, Antigen, T-Cell, alpha-beta

Identifiers

PMID27183575
PMCPMC4902001

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.