Evidence map›Paper›PMID 27182430›Full record

ArticleStandards in genomic sciences2016

Complete genome sequence of 'Halanaeroarchaeum sulfurireducens' M27-SA2, a sulfur-reducing and acetate-oxidizing haloarchaeon from the deep-sea hypersaline anoxic lake Medee.

Enzo Messina, Dimitry Y Sorokin, Ilya V Kublanov, Stepan Toshchakov, Anna Lopatina, Erika Arcadi, Francesco Smedile, Gina La Spada, Violetta La Cono, Michail M Yakimov

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In one paragraph

Article in Standards in genomic sciences, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
2.5field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 19 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Enzo MessinaInstitute for Coastal Marine Environment, CNR, Messina, Italy.
Dimitry Y SorokinWinogradsky Institute of Microbiology, Russian Academy of Sciences, Moscow, Russia ; Department of Biotechnology, Deft University of Technology, Delft, The Netherlands.
Ilya V KublanovWinogradsky Institute of Microbiology, Russian Academy of Sciences, Moscow, Russia.
Stepan ToshchakovImmanuel Kant Baltic Federal University, Kaliningrad, Russia.
Anna LopatinaInstitute of Molecular Genetics and Gene Biology, Russian Academy of Sciences, Moscow, Russia.
Erika ArcadiInstitute for Coastal Marine Environment, CNR, Messina, Italy.
Francesco SmedileInstitute for Coastal Marine Environment, CNR, Messina, Italy.
Gina La SpadaInstitute for Coastal Marine Environment, CNR, Messina, Italy.
Violetta La ConoInstitute for Coastal Marine Environment, CNR, Messina, Italy.
Michail M YakimovInstitute for Coastal Marine Environment, CNR, Messina, Italy.
Institute for Coastal Marine Environment · ITRussian Academy of Sciences · RUImmanuel Kant Baltic Federal University · RUInstitute of Gene Biology · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Strain M27-SA2 was isolated from the deep-sea salt-saturated anoxic lake Medee, which represents one of the most hostile extreme environments on our planet. On the basis of physiological studies and phylogenetic positioning this extremely halophilic euryarchaeon belongs to a novel genus 'Halanaeroarchaeum' within the family Halobacteriaceae. All members of this genus cultivated so far are strict anaerobes using acetate as the sole carbon and energy source and elemental sulfur as electron acceptor. Here we report the complete genome sequence of the strain M27-SA2 which is composed of a 2,129,244-bp chromosome and a 124,256-bp plasmid. This is the second complete genome sequence within the genus Halanaeroarchaeum. We demonstrate that genome of 'Halanaeroarchaeum sulfurireducens' M27-SA2 harbors complete metabolic pathways for acetate and sulfur catabolism and for de novo biosynthesis of 19 amino acids. The genomic analysis also reveals that 'Halanaeroarchaeum sulfurireducens' M27-SA2 harbors two prophage loci and one CRISPR locus, highly similar to that of Kulunda Steppe (Altai, Russia) isolate 'H. sulfurireducens' HSR2(T). The discovery of sulfur-respiring acetate-utilizing haloarchaeon in deep-sea hypersaline anoxic lakes has certain significance for understanding the biogeochemical functioning of these harsh ecosystems, which are incompatible with life for common organisms. Moreover, isolations of Halanaeroarchaeum members from geographically distant salt-saturated sites of different origin suggest a high degree of evolutionary success in their adaptation to this type of extreme biotopes around the world.

Indexed as

Anoxic habitatsExtremely halophilic archaeaHypersaline lakeStrictly anaerobicSulfur reduction

Identifiers

PMID27182430
PMCPMC4866403
OpenAlexW2351942104

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.