Evidence map›Paper›PMID 27182166›Full record

ArticleWorld journal of gastroenterology2016

Methylation of DAPK and THBS1 genes in esophageal gastric-type columnar metaplasia.

Roberto Herrera-Goepfert, Luis F Oñate-Ocaña, José Luis Mosqueda-Vargas, Luis A Herrera, Clementina Castro, Julia Mendoza, Rodrigo González-Barrios

Open access · hybridAbstract read
In one paragraph

Article in World journal of gastroenterology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.6field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Roberto Herrera-GoepfertRoberto Herrera-Goepfert, José Luis Mosqueda-Vargas, Department of Pathology, Instituto Nacional de Cancerología (INCan), 10480 México, DF, México.
Luis F Oñate-OcañaRoberto Herrera-Goepfert, José Luis Mosqueda-Vargas, Department of Pathology, Instituto Nacional de Cancerología (INCan), 10480 México, DF, México.
José Luis Mosqueda-VargasRoberto Herrera-Goepfert, José Luis Mosqueda-Vargas, Department of Pathology, Instituto Nacional de Cancerología (INCan), 10480 México, DF, México.
Luis A HerreraRoberto Herrera-Goepfert, José Luis Mosqueda-Vargas, Department of Pathology, Instituto Nacional de Cancerología (INCan), 10480 México, DF, México.
Clementina CastroRoberto Herrera-Goepfert, José Luis Mosqueda-Vargas, Department of Pathology, Instituto Nacional de Cancerología (INCan), 10480 México, DF, México.
Julia MendozaRoberto Herrera-Goepfert, José Luis Mosqueda-Vargas, Department of Pathology, Instituto Nacional de Cancerología (INCan), 10480 México, DF, México.
Rodrigo González-BarriosRoberto Herrera-Goepfert, José Luis Mosqueda-Vargas, Department of Pathology, Instituto Nacional de Cancerología (INCan), 10480 México, DF, México.
Instituto Nacional de Cancerología · MX

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

aimTo explore methylation of DAPK, THBS1, CDH-1, and p14 genes, and Helicobacter pylori (H. pylori) status in individuals harboring esophageal columnar metaplasia.

methodsDistal esophageal mucosal samples obtained by endoscopy and histologically diagnosed as gastric-type (non-specialized) columnar metaplasia, were studied thoroughly. DNA was extracted from paraffin blocks, and methylation status of death-associated protein kinase (DAPK), thrombospondin-1 (THBS1), cadherin-1 (CDH1), and p14 genes, was examined using a methyl-sensitive polymerase chain reaction (MS-PCR) and sodium bisulfite modification protocol. H. pylori cagA status was determined by PCR.

resultsIn total, 68 subjects (33 females and 35 males), with a mean age of 52 years, were included. H. pylori cagA positive was present in the esophageal gastric-type metaplastic mucosa of 18 individuals. DAPK, THSB1, CDH1, and p14 gene promoters were methylated by MS-PCR in 40 (58.8%), 33 (48.5%), 46 (67.6%), and 23 (33.8%) cases of the 68 esophageal samples. H. pylori status was associated with methylation of DAPK (P = 0.003) and THBS1 (P = 0.019).

conclusionDNA methylation occurs in cases of gastric-type (non-specialized) columnar metaplasia of the esophagus, and this modification is associated with H. pylori cagA positive infection.

Indexed as

DNA MethylationAdultAgedAged, 80 and overAntigens, BacterialAntigens, CDBacterial ProteinsBiomarkers, TumorCadherinsDeath-Associated Protein KinasesEsophageal NeoplasmsFemaleHelicobacter pyloriHumansMaleMexicoAntigens, BacterialAntigens, CDBacterial ProteinsBiomarkers, TumorCadherinscagA protein, Helicobacter pyloriCDH1 protein, humanDeath-Associated Protein KinasesThrombospondin 1thrombospondin-1, humanTumor Suppressor Protein p14ARFcagADeath-associated protein kinaseDNA methylationEsophageal columnar metaplasiaHelicobacter pyloriThrombospondin-1

Identifiers

PMID27182166
PMCPMC4858638
OpenAlexW2352651468

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.