Evidence map›Paper›PMID 27181357›Full record

ArticleBiochemical and biophysical research communications2016

Identification of IgM as a contaminant in lectin-FLISA assays for HCC detection.

Mengjun Wang, Mary Ann Comunale, Harmin Herrera, Lucy Betesh, Yuko Kono, Anand Mehta

Abstract read
In one paragraph

Article in Biochemical and biophysical research communications, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.3field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 7 citations in OpenAlex.

  1. Trial
  2. Article
  3. Article
  4. Article
  5. Biomarkers for the Early Detection of Hepatocellular Carcinoma.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2020
    Article
  6. Changes in the Glycosylation of Kininogen and the Development of a Kininogen-Based Algorithm for the Early Detection of HCC.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Mengjun WangDrexel University College of Medicine, Department of Microbiology and Immunology, Room 18307 New College Building, 245 N. 15th Street, Philadelphia, PA, 19102, USA.
Mary Ann ComunaleDrexel University College of Medicine, Department of Microbiology and Immunology, Room 18307 New College Building, 245 N. 15th Street, Philadelphia, PA, 19102, USA.
Harmin HerreraGraduate School of Biomedical Sciences and Professional Studies, Drexel University College of Medicine, Microbiology and Immunology Graduate Program, 2900 Queen Lane, Philadelphia, PA, 19129, USA.
Lucy BeteshDrexel University College of Medicine, Department of Microbiology and Immunology, Room 18307 New College Building, 245 N. 15th Street, Philadelphia, PA, 19102, USA.
Yuko KonoDivision of Gastroenterology & Hepatology, University of California, San Diego 200 West Arbor Drive, San Diego, CA 92103-8413, USA.
Anand MehtaDrexel University College of Medicine, Department of Microbiology and Immunology, Room 18307 New College Building, 245 N. 15th Street, Philadelphia, PA, 19102, USA. Electronic address: anand.mehta@drexelmed.edu.
Drexel University · USUniversity of California, San Diego · US

Funding

Predicting HCC through GlycomicsR01CA120206 · NCI · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI MEHTA, ANAND S. · 2006 to 2016
$4.3M
Aberrantly secreted glycoproteins as markers of liver cancerU01CA168856 · NCI · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI MEHTA, ANAND S. · 2012 to 2016
$1.5M
A Mass Spectrometry System for Quantitative ProteomicsS10OD016400 · OD · RBHS-ROBERT WOOD JOHNSON MEDICAL SCHOOL · PI LOBEL, PETER · 2014 to 2014
$561k
NCI NIH HHS R01 CA120206NCI NIH HHS U01 CA168856NIH HHS S10 OD016400
6 · The paper itself

Abstract

Liver disease, in the form of hepatocellular carcinoma (HCC) accounts for > 700,000 deaths worldwide. A major reason for this is late diagnosis of HCC. The currently used biomarker, serum alpha-fetoprotein (AFP) is elevated in 40-60% of those with HCC and other markers that can either compliment or replace AFP are desired. Our previous work has identified a number of proteins that contain altered glycans in HCC. Specifically, these altered glycans were increased levels of core and outer arm fucosylation. To determine the clinical usefulness of those identified glycoproteins, a plate based assay was developed that allowed for the detection of fucosylated glycoforms. While this method was applicable to a number of independent patient sets, it was unable to specifically detect fucosylated glycoforms in many patient samples. That is, some material was present in serum that led to non-specific signal in the lectin- fluorescence -linked immunosorbent assay (lectin-FLISA). To address this issue, a systematic process was undertaken to identify the material. This material was found to be increased levels of lectin reactive IgM. Removal of both IgG and IgM using a multi-step protein A/G incubation and filtration step removed the contaminating signal and allowed for the analysis of specific protein glycoforms. This assay was subsequently used on two sample sets, one that was shown previously to be unable to be tested via a lectin FLISA and in a larger independent sample set. The clinical usefulness of this assay in the early detection of HCC is discussed.

Indexed as

Immunosorbent Techniquesalpha-FetoproteinsBiomarkers, TumorCarcinoma, HepatocellularGlycosylationHumansImmunoglobulin GImmunoglobulin MLectinsLiver Neoplasmsalpha-FetoproteinsBiomarkers, TumorImmunoglobulin GImmunoglobulin MLectinsBiomarkerGlycosylationHepatocellular carcinomaLectinLiver cancer

Identifiers

PMID27181357
PMCPMC5067009
OpenAlexW2365852240

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.