Evidence map›Paper›PMID 27178561›Full record

ArticleBMC genomics2016

Insights on the virulence of swine respiratory tract mycoplasmas through genome-scale metabolic modeling.

Mariana G Ferrarini, Franciele M Siqueira, Scheila G Mucha, Tony L Palama, Élodie Jobard, Bénédicte Elena-Herrmann, Ana T R Vasconcelos, Florence Tardy, Irene S Schrank, Arnaldo Zaha and 1 more

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed, 1 pooled it
4.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 1 synthesis or guideline pooled it, 43 citations in OpenAlex.

  1. Pooled it
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  8. Metagenome-assembled genomes of threeAccess microbiology · 2024
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  13. Review
  14. Attenuation ofFrontiers in veterinary science · 2021
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  15. Review
  16. Combined Transcriptome Sequencing ofFrontiers in microbiology · 2020
    Article
  17. Article
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  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 7 institutions in 2 countries.

Mariana G FerrariniERABLE, Inria, 43, Bd du 11 Novembre 1918, Villeurbanne, France.
Franciele M SiqueiraCBiot, UFRGS, Av Bento Gon'calves, Porto Alegre, 9500, Brazil.
Scheila G MuchaCBiot, UFRGS, Av Bento Gon'calves, Porto Alegre, 9500, Brazil.
Tony L PalamaUniversité de Lyon, Institut des Sciences Analytiques (CNRS, ENS Lyon, Université Lyon 1), 5, Rue de la Doua, Villeurbanne, France.
Élodie JobardUniversité de Lyon, Institut des Sciences Analytiques (CNRS, ENS Lyon, Université Lyon 1), 5, Rue de la Doua, Villeurbanne, France.
Bénédicte Elena-HerrmannUniversité de Lyon, Institut des Sciences Analytiques (CNRS, ENS Lyon, Université Lyon 1), 5, Rue de la Doua, Villeurbanne, France.
Ana T R VasconcelosLaboratório Nacional de Computaćão Científica, Av. Getúlio Vargas, 333, Petrópolis, Brazil.
Florence TardyAnses, Laboratoire de Lyon, UMR Mycoplasmoses des Ruminants, 31, Av Tony Garnier, Lyon, France.
Irene S SchrankCBiot, UFRGS, Av Bento Gon'calves, Porto Alegre, 9500, Brazil.
Arnaldo ZahaCBiot, UFRGS, Av Bento Gon'calves, Porto Alegre, 9500, Brazil.
Marie-France SagotERABLE, Inria, 43, Bd du 11 Novembre 1918, Villeurbanne, France. marie-france.sagot@inria.fr.
Universidade Federal do Rio Grande do Sul · BRLaboratoire de Biométrie et Biologie Evolutive · FRÉcole Normale Supérieure de Lyon · FRInstitut des Sciences Analytiques · FRLaboratório Nacional de Computação Científica · BRPathophysiology, Diagnosis and Treatment of Bone Diseases · FRUniversité Claude Bernard Lyon 1 · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe respiratory tract of swine is colonized by several bacteria among which are three Mycoplasma species: Mycoplasma flocculare, Mycoplasma hyopneumoniae and Mycoplasma hyorhinis. While colonization by M. flocculare is virtually asymptomatic, M. hyopneumoniae is the causative agent of enzootic pneumonia and M. hyorhinis is present in cases of pneumonia, polyserositis and arthritis. The genomic resemblance among these three Mycoplasma species combined with their different levels of pathogenicity is an indication that they have unknown mechanisms of virulence and differential expression, as for most mycoplasmas.

methodsIn this work, we performed whole-genome metabolic network reconstructions for these three mycoplasmas. Cultivation tests and metabolomic experiments through nuclear magnetic resonance spectroscopy (NMR) were also performed to acquire experimental data and further refine the models reconstructed in silico.

resultsEven though the refined models have similar metabolic capabilities, interesting differences include a wider range of carbohydrate uptake in M. hyorhinis, which in turn may also explain why this species is a widely contaminant in cell cultures. In addition, the myo-inositol catabolism is exclusive to M. hyopneumoniae and may be an important trait for virulence. However, the most important difference seems to be related to glycerol conversion to dihydroxyacetone-phosphate, which produces toxic hydrogen peroxide. This activity, missing only in M. flocculare, may be directly involved in cytotoxicity, as already described for two lung pathogenic mycoplasmas, namely Mycoplasma pneumoniae in human and Mycoplasma mycoides subsp. mycoides in ruminants. Metabolomic data suggest that even though these mycoplasmas are extremely similar in terms of genome and metabolism, distinct products and reaction rates may be the result of differential expression throughout the species.

conclusionsWe were able to infer from the reconstructed networks that the lack of pathogenicity of M. flocculare if compared to the highly pathogenic M. hyopneumoniae may be related to its incapacity to produce cytotoxic hydrogen peroxide. Moreover, the ability of M. hyorhinis to grow in diverse sites and even in different hosts may be a reflection of its enhanced and wider carbohydrate uptake. Altogether, the metabolic differences highlighted in silico and in vitro provide important insights to the different levels of pathogenicity observed in each of the studied species.

Indexed as

Energy MetabolismGenome, BacterialGenomicsModels, BiologicalAnimalsBacterial LoadBiomassComputational BiologyGene OntologyMagnetic Resonance SpectroscopyMetabolic Networks and PathwaysMetabolomicsMicrobial ViabilityMycoplasma hyopneumoniaePneumonia of Swine, MycoplasmalSwineHydrogen peroxideMetabolic networkMetabolismMollicutesMycoplasmaWhole-genome metabolic reconstruction

Identifiers

PMID27178561
PMCPMC4866288
OpenAlexW2348031741

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.