Evidence map›Paper›PMID 27178263›Full record

ArticlemBio2016

Toward a Predictive Understanding of Earth's Microbiomes to Address 21st Century Challenges.

Martin J Blaser, Zoe G Cardon, Mildred K Cho, Jeffrey L Dangl, Timothy J Donohue, Jessica L Green, Rob Knight, Mary E Maxon, Trent R Northen, Katherine S Pollard and 1 more

Abstract readEditorial
In one paragraph

Article in mBio, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 70 papers.

0numbers the graph read from it
0cells of the map it votes in
70citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

70 citing papers in PubMed.

  1. Review
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  15. Article
  16. Toward Understanding Microbial Ecology to Restore a Degraded Ecosystem.International journal of environmental research and public health · 2023
    Article
  17. Article
  18. Article
  19. The bioactive potential of phytohormones: A review.Biotechnology reports (Amsterdam, Netherlands) · 2022
    Review
  20. Review

10 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Martin J BlaserDepartments of Microbiology and Medicine, New York University School of Medicine, New York, New York, USA.
Zoe G CardonThe Ecosystems Center, Marine Biological Laboratory, Woods Hole, Massachusetts, USA.
Mildred K ChoStanford Center for Biomedical Ethics, Stanford University, Palo Alto, California, USA.
Jeffrey L DanglDepartment of Biology and Howard Hughes Medical Institute, University of North Carolina, Chapel Hill, North Carolina, USA.
Timothy J DonohueDepartment of Bacteriology, Great Lakes Bioenergy Research Center and Wisconsin Energy Institute, University of Wisconsin-Madison, Madison, Wisconsin, USA.ORCID 0000-0001-8738-2467
Jessica L GreenBiology and the Built Environment Center, University of Oregon, Eugene, Oregon, USA Department of Biology, Institute of Ecology and Evolution, University of Oregon, Eugene, Oregon, USA.
Rob KnightDepartments of Pediatrics and Computer Science & Engineering, and Center for Microbiome Innovation, University of California San Diego, La Jolla, California, USA.
Mary E MaxonBiosciences, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Trent R NorthenBiosciences, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Katherine S PollardDivision of Biostatistics, Gladstone Institutes and Institute for Human Genetics, Institute for Computational Health Science, University of California, San Francisco, California, USA.
Eoin L BrodieEarth and Environmental Sciences, Lawrence Berkeley National Lab, Berkeley, California, USA Department of Environmental Science, Policy and Management, University of California, Berkeley, California, USA ELBrodie@lbl.gov.ORCID 0000-0002-8453-8435

Funding

Systematic Development of Antiretroviral Intravaginal Rings for HIV PreventionU19AI113048 · NIAID · OAK CREST INSTITUTE OF SCIENCE · PI MALONE, AMANDA · 2014 to 2018
$18.4M
Trace the flow of genes in the gut microbiome of obese and lean twin pairsP01DK078669 · NIDDK · WASHINGTON UNIVERSITY · PI GORDON, JEFFREY I · 2007 to 2018
$16.0M
Systems Biology Approach to Redefine Susceptibility Testing and Treatment of MDR Pathogens in the Context of Host ImmunityU01AI124316 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI PALSSON, BERNHARD O · 2016 to 2020
$10.2M
Disappearing gastrointestinal microbiota in epidemic obesity.R01DK090989 · NIDDK · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI BLASER, MARTIN J · 2010 to 2015
$7.4M
ODF: Support infrastructure for NextGen sequence storage analysis and mgtU01HG006537 · NHGRI · UNIVERSITY OF MARYLAND BALTIMORE · PI WHITE, OWEN R · 2012 to 2016
$4.1M
Longitudinal Multiomics Microbial Profiling in Healthy and Disease IndividualsU54DE023789 · NIDCR · STANFORD UNIVERSITY · PI SNYDER, MICHAEL P., WEINSTOCK, GEORGE M · 2013 to 2014
$3.0M
NHGRI NIH HHS U01 HG006537NIAID NIH HHS U01 AI124316NIAID NIH HHS U19 AI113048NIDCR NIH HHS U54 DE023789NIDDK NIH HHS P01 DK078669NIDDK NIH HHS R01 DK090989
6 · The paper itself

Abstract

Microorganisms have shaped our planet and its inhabitants for over 3.5 billion years. Humankind has had a profound influence on the biosphere, manifested as global climate and land use changes, and extensive urbanization in response to a growing population. The challenges we face to supply food, energy, and clean water while maintaining and improving the health of our population and ecosystems are significant. Given the extensive influence of microorganisms across our biosphere, we propose that a coordinated, cross-disciplinary effort is required to understand, predict, and harness microbiome function. From the parallelization of gene function testing to precision manipulation of genes, communities, and model ecosystems and development of novel analytical and simulation approaches, we outline strategies to move microbiome research into an era of causality. These efforts will improve prediction of ecosystem response and enable the development of new, responsible, microbiome-based solutions to significant challenges of our time.

Indexed as

Earth, PlanetMicrobiotaEcosystemForecastingHumansModels, TheoreticalResearchWaterWater

Identifiers

PMID27178263
PMCPMC4895116

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.