Evidence map›Paper›PMID 27177130›Full record

ArticleJournal of evolutionary biology2016

Ecological speciation in sympatric palms: 1. Gene expression, selection and pleiotropy.

L T Dunning, H Hipperson, W J Baker, R K Butlin, C Devaux, I Hutton, J Igea, A S T Papadopulos, X Quan, C M Smadja and 2 more

Abstract read
In one paragraph

Article in Journal of evolutionary biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Sympatric speciation in mountain roses (Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2020
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Transcriptomes Divergence ofFrontiers in genetics · 2018
    Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

L T DunningDepartment of Life Sciences, Imperial College London, Ascot, UK.
H HippersonDepartment of Life Sciences, Imperial College London, Ascot, UK.
W J BakerRoyal Botanic Gardens, Kew, Richmond, UK.
R K ButlinDepartment of Animal and Plant Sciences, University of Sheffield, Sheffield, UK.
C DevauxDepartment of Life Sciences, Imperial College London, Ascot, UK.
I HuttonLord Howe Island Museum, Lord Howe Island, NSW, Australia.
J IgeaDepartment of Life Sciences, Imperial College London, Ascot, UK.
A S T PapadopulosDepartment of Life Sciences, Imperial College London, Ascot, UK.ORCID 0000-0001-6589-754X
X QuanDepartment of Life Sciences, Imperial College London, Ascot, UK.
C M SmadjaDepartment of Life Sciences, Imperial College London, Ascot, UK.
C G N TurnbullDepartment of Life Sciences, Imperial College London, London, UK.
V SavolainenDepartment of Life Sciences, Imperial College London, Ascot, UK.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ecological speciation requires divergent selection, reproductive isolation and a genetic mechanism to link the two. We examined the role of gene expression and coding sequence evolution in this process using two species of Howea palms that have diverged sympatrically on Lord Howe Island, Australia. These palms are associated with distinct soil types and have displaced flowering times, representing an ideal candidate for ecological speciation. We generated large amounts of RNA-Seq data from multiple individuals and tissue types collected on the island from each of the two species. We found that differentially expressed loci as well as those with divergent coding sequences between Howea species were associated with known ecological and phenotypic differences, including response to salinity, drought, pH and flowering time. From these loci, we identified potential 'ecological speciation genes' and further validate their effect on flowering time by knocking out orthologous loci in a model plant species. Finally, we put forward six plausible ecological speciation loci, providing support for the hypothesis that pleiotropy could help to overcome the antagonism between selection and recombination during speciation with gene flow.

Indexed as

Genetic SpeciationSympatryArecaceaeAustraliaGene FlowIslandsLord Howe Islandpositive selectionsympatric speciationtranscriptomics

Identifiers

PMID27177130
PMCPMC6680112

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.