Evidence map›Paper›PMID 27174630›Full record

ArticleFEBS letters2016

The transcriptional activator GaaR of Aspergillus niger is required for release and utilization of d-galacturonic acid from pectin.

Ebru Alazi, Jing Niu, Joanna E Kowalczyk, Mao Peng, Maria Victoria Aguilar Pontes, Jan A L van Kan, Jaap Visser, Ronald P de Vries, Arthur F J Ram

Open access · hybridAbstract readLetter
In one paragraph

Article in FEBS letters, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
19.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 75 citations in OpenAlex.

  1. Article
  2. Mining Genetically Encoded Biosensors from Filamentous Fungi.Journal of fungi (Basel, Switzerland) · 2026
    Review
  3. The genome-scale sugar metabolic model fromCurrent research in microbial sciences · 2026
    Article
  4. Article
  5. Article
  6. Dissecting the complex regulation of pentose utilization inCurrent research in microbial sciences · 2025
    Article
  7. Article
  8. Article
  9. Regulation of nutrient utilization in filamentous fungi.Applied microbiology and biotechnology · 2023
    Review
  10. Review
  11. Article
  12. Article
  13. Utilization of ferulic acid inFrontiers in fungal biology · 2022
    Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Ebru AlaziMolecular Microbiology and Biotechnology, Institute of Biology Leiden, Leiden University, The Netherlands.
Jing NiuMolecular Microbiology and Biotechnology, Institute of Biology Leiden, Leiden University, The Netherlands.
Joanna E KowalczykFungal Physiology, CBS-KNAW Fungal Biodiversity Centre & Fungal Molecular Physiology, Utrecht University, The Netherlands.
Mao PengFungal Physiology, CBS-KNAW Fungal Biodiversity Centre & Fungal Molecular Physiology, Utrecht University, The Netherlands.
Maria Victoria Aguilar PontesFungal Physiology, CBS-KNAW Fungal Biodiversity Centre & Fungal Molecular Physiology, Utrecht University, The Netherlands.
Jan A L van KanLaboratory of Phytopathology, Wageningen University, The Netherlands.
Jaap VisserMolecular Microbiology and Biotechnology, Institute of Biology Leiden, Leiden University, The Netherlands.
Ronald P de VriesFungal Physiology, CBS-KNAW Fungal Biodiversity Centre & Fungal Molecular Physiology, Utrecht University, The Netherlands.
Arthur F J RamMolecular Microbiology and Biotechnology, Institute of Biology Leiden, Leiden University, The Netherlands.
Utrecht University · NLLeiden University · NLWesterdijk Fungal Biodiversity Institute · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We identified the d-galacturonic acid (GA)-responsive transcriptional activator GaaR of the saprotrophic fungus, Aspergillus niger, which was found to be essential for growth on GA and polygalacturonic acid (PGA). Growth of the ΔgaaR strain was reduced on complex pectins. Genome-wide expression analysis showed that GaaR is required for the expression of genes necessary to release GA from PGA and more complex pectins, to transport GA into the cell, and to induce the GA catabolic pathway. Residual growth of ΔgaaR on complex pectins is likely due to the expression of pectinases acting on rhamnogalacturonan and subsequent metabolism of the monosaccharides other than GA.

Indexed as

Aspergillus nigerBiological Transport, ActiveFungal ProteinsGene DeletionGenome-Wide Association StudyHexuronic AcidsPectinsTrans-ActivatorsFungal Proteinsgalacturonic acidHexuronic AcidsPectinsTrans-Activatorsgene regulationpectinasepolygalacturonic acidtranscriptomicsZn2Cys6 transcription factor

Identifiers

PMID27174630
PMCPMC5111758
OpenAlexW2350270487

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.