Evidence map›Paper›PMID 27173935›Full record

ArticleCell host & microbe2016

Genetic Determinants of the Gut Microbiome in UK Twins.

Julia K Goodrich, Emily R Davenport, Michelle Beaumont, Matthew A Jackson, Rob Knight, Carole Ober, Tim D Spector, Jordana T Bell, Andrew G Clark, Ruth E Ley

Open access · bronzeAbstract readTwin Study
In one paragraph

Article in Cell host & microbe, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 598 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
598citing papers in PubMed, 4 pooled it
53.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

598 citing papers in PubMed, 4 syntheses or guidelines pooled it, 1,084 citations in OpenAlex.

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  12. Toxicological Evaluation ofInternational journal of molecular sciences · 2026
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538 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 3 countries.

Julia K GoodrichDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14850, USA.
Emily R DavenportDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14850, USA.
Michelle BeaumontDepartment of Twin Research & Genetic Epidemiology, King's College London, London SE1 7EH, UK.
Matthew A JacksonDepartment of Twin Research & Genetic Epidemiology, King's College London, London SE1 7EH, UK.
Rob KnightDepartments of Pediatrics and Computer Science and Engineering, University of California San Diego, La Jolla, CA 92093, USA.
Carole OberDepartment of Human Genetics, University of Chicago, Chicago, IL 60637, USA.
Tim D SpectorDepartment of Twin Research & Genetic Epidemiology, King's College London, London SE1 7EH, UK.
Jordana T BellDepartment of Twin Research & Genetic Epidemiology, King's College London, London SE1 7EH, UK.
Andrew G ClarkDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14850, USA.
Ruth E LeyDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14850, USA; Department of Microbiome Science, Max Planck Institute for Developmental Biology, 72076 Tübingen, Germany. Electronic address: rel222@cornell.edu.
King's College London · GBCornell University · USMax Planck Institute for Developmental Biology · DEUniversity of California, San Diego · USUniversity of Chicago · US

Funding

Translational Research CoreP30DK020541 · NIDDK · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI Shuibing Chen · 2015 to 2026
$27.7M
Genetic Transmission of Components of the Human Gut MicrobiomeR01DK093595 · NIDDK · CORNELL UNIVERSITY · PI CLARK, ANDREW G, LEY, RUTH EMILY · 2011 to 2020
$3.5M
Development of immunization strategies to reshape pathogenic microbiomesDP2OD007444 · OD · CORNELL UNIVERSITY · PI LEY, RUTH EMILY · 2010 to 2010
$2.3M
Modeling Human Gut Microbiome Community Structure in Healthy and Diseased StatesF32DK109595 · NIDDK · CORNELL UNIVERSITY · PI DAVENPORT, EMILY · 2016 to 2018
$173k
Medical Research Council MR/N01183X/1Medical Research Council MR/N030125/1NIDDK NIH HHS F32 DK109595NIDDK NIH HHS P30 DK020541NIDDK NIH HHS R01 DK093595NIH HHS DP2 OD007444Wellcome Trust
6 · The paper itself

Abstract

Studies in mice and humans have revealed intriguing associations between host genetics and the microbiome. Here we report a 16S rRNA-based analysis of the gut microbiome in 1,126 twin pairs, a subset of which was previously reported. Tripling the sample narrowed the confidence intervals around heritability estimates and uncovered additional heritable taxa, some of which are validated in other studies. Repeat sampling of subjects showed heritable taxa to be temporally stable. A candidate gene approach uncovered associations between heritable taxa and genes related to diet, metabolism, and olfaction. We replicate an association between Bifidobacterium and the lactase (LCT) gene locus and identify an association between the host gene ALDH1L1 and the bacteria SHA-98, suggesting a link between formate production and blood pressure. Additional genes detected are involved in barrier defense and self/non-self recognition. Our results indicate that diet-sensing, metabolism, and immune defense are important drivers of human-microbiome co-evolution.

Indexed as

TwinsBase SequenceFemaleGastrointestinal MicrobiomeGenetic VariationHumansMaleMicrobial ConsortiaUnited Kingdom

Identifiers

PMID27173935
PMCPMC4915943
OpenAlexW2360231252

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.