Evidence map›Paper›PMID 27173853›Full record

ArticleThe Journal of urology2016

Molecular Characterization of the Genital Organizer: Gene Expression Profile of the Mouse Urethral Plate Epithelium.

Brooke A Armfield, Ashley W Seifert, Zhengui Zheng, Emily M Merton, Jason R Rock, Maria-Cecilia Lopez, Henry V Baker, Martin J Cohn

Abstract read
In one paragraph

Article in The Journal of urology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
2.5field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 13 citations in OpenAlex.

  1. Protein signaling and morphological development of the tail fluke in the embryonic beluga whale (Delphinapterus leucas).Developmental dynamics : an official publication of the American Association of Anatomists · 2024
    Article
  2. Article
  3. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Brooke A ArmfieldDepartment of Molecular Genetics and Microbiology, University of Florida Genetics Institute, University of Florida, Gainesville, Florida.
Ashley W SeifertDepartment of Biology, University of Florida Genetics Institute, University of Florida, Gainesville, Florida.
Zhengui ZhengDepartment of Molecular Genetics and Microbiology, University of Florida Genetics Institute, University of Florida, Gainesville, Florida.
Emily M MertonDepartment of Molecular Genetics and Microbiology, University of Florida Genetics Institute, University of Florida, Gainesville, Florida.
Jason R RockDepartment of Molecular Genetics and Microbiology, University of Florida Genetics Institute, University of Florida, Gainesville, Florida.
Maria-Cecilia LopezDepartment of Molecular Genetics and Microbiology, University of Florida Genetics Institute, University of Florida, Gainesville, Florida.
Henry V BakerDepartment of Molecular Genetics and Microbiology, University of Florida Genetics Institute, University of Florida, Gainesville, Florida.
Martin J CohnDepartment of Molecular Genetics and Microbiology, University of Florida Genetics Institute, University of Florida, Gainesville, Florida; Department of Biology, University of Florida Genetics Institute, University of Florida, Gainesville, Florida; Howard Hughes Medical Institute, University of Florida Genetics Institute, University of Florida, Gainesville, Florida. Electronic address: MJCohn@ufl.edu.
University of Florida · US

Funding

Targets of Endocrine Disruptors in External GenitaliaR01ES017099 · NIEHS · UNIVERSITY OF FLORIDA · PI COHN, MARTIN J · 2010 to 2014
$2.0M
3D imaging and deep sequencing of gene expression in the genital tubercleU01DK094523 · NIDDK · UNIVERSITY OF FLORIDA · PI COHN, MARTIN J · 2011 to 2015
$1.7M
DORSOVENTRAL PATTERNING OF THE MAMMALIAN CLOACAF32HD070721 · NICHD · UNIVERSITY OF FLORIDA · PI ARMFIELD, BROOKE A · 2012 to 2014
$156k
NICHD NIH HHS F32 HD070721NIDDK NIH HHS U01 DK094523NIEHS NIH HHS R01 ES017099
6 · The paper itself

Abstract

purposeLower urinary tract malformations are among the most common congenital anomalies in humans. Molecular genetic studies of mouse external genital development have begun to identify mechanisms that pattern the genital tubercle and orchestrate urethral tubulogenesis. The urethral plate epithelium is an endodermal signaling region that has an essential role in external genital development. However, little is known about the molecular identity of this cell population or the genes that regulate its activity. MATERIALS AND

methodsWe used microarray analysis to characterize differences in gene expression between urethral plate epithelium and surrounding tissue in mouse genital tubercles. In situ hybridizations were performed to map gene expression patterns and ToppCluster (https://toppcluster.cchmc.org/) was used to analyze gene associations.

resultsA total of 84 genes were enriched at least 20-fold in urethral plate epithelium relative to surrounding tissue. The majority of these genes were expressed throughout the urethral plate in males and females at embryonic day 12.5 when the urethral plate is known to signal. Functional analysis using ToppCluster revealed genetic pathways with known functions in other organ systems but unknown roles in external genital development. Additionally, a 3-dimensional molecular atlas of genes enriched in urethral plate epithelium was generated and deposited at the GUDMAP (GenitoUrinary Development Molecular Anatomy Project) website (http://gudmap.org/).

conclusionsWe identified dozens of genes previously unknown to be expressed in urethral plate epithelium at a crucial developmental period. It provides a novel panel of genes for analysis in animal models and in humans with external genital anomalies.

Indexed as

Gene Expression Regulation, DevelopmentalAnimalsFemaleHedgehog ProteinsIn Situ HybridizationMaleMiceModels, AnimalProtein Array AnalysisRNASignal TransductionUrethraUrotheliumHedgehog ProteinsRNAcongenital abnormalitiesgene expressiongenitaliamicroarray analysisurethra

Identifiers

PMID27173853
PMCPMC5293367
OpenAlexW2347158330

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.