Evidence map›Paper›PMID 27172519›Full record

ArticleVector borne and zoonotic diseases (Larchmont, N.Y.)2016

Genetic Diversity of Artybash Virus in the Laxmann's Shrew (Sorex caecutiens).

Satoru Arai, Hae Ji Kang, Se Hun Gu, Satoshi D Ohdachi, Joseph A Cook, Liudmila N Yashina, Keiko Tanaka-Taya, Sergey A Abramov, Shigeru Morikawa, Nobuhiko Okabe and 2 more

Open access · greenAbstract read
In one paragraph

Article in Vector borne and zoonotic diseases (Larchmont, N.Y.), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.5field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 28 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 3 countries.

Satoru Arai1 Infectious Disease Surveillance Center, National Institute of Infectious Diseases , Tokyo, Japan .
Hae Ji Kang2 Department of Pediatrics and Tropical Medicine, Medical Microbiology and Pharmacology, University of Hawaii at Manoa , Honolulu, Hawaii.
Se Hun Gu2 Department of Pediatrics and Tropical Medicine, Medical Microbiology and Pharmacology, University of Hawaii at Manoa , Honolulu, Hawaii.
Satoshi D Ohdachi3 Institute of Low Temperature Science, Hokkaido University , Sapporo, Japan .
Joseph A Cook4 Department of Biology and Museum of Southwestern Biology, University of New Mexico , Albuquerque, New Mexico .
Liudmila N Yashina5 State Research Center of Virology and Biotechnology "Vector," Koltsovo , Russia .
Keiko Tanaka-Taya1 Infectious Disease Surveillance Center, National Institute of Infectious Diseases , Tokyo, Japan .
Sergey A Abramov6 Institute of Systematics and Ecology of Animals , Novosibirsk, Russia .
Shigeru Morikawa7 Department of Veterinary Science, National Institute of Infectious Diseases, Tokyo, Japan .
Nobuhiko Okabe1 Infectious Disease Surveillance Center, National Institute of Infectious Diseases , Tokyo, Japan .
Kazunori Oishi1 Infectious Disease Surveillance Center, National Institute of Infectious Diseases , Tokyo, Japan .
Richard Yanagihara2 Department of Pediatrics and Tropical Medicine, Medical Microbiology and Pharmacology, University of Hawaii at Manoa , Honolulu, Hawaii.
National Institute of Infectious Diseases · JPUniversity of Hawaiʻi at Mānoa · USHokkaido University · JPInstitute of Systematics and Ecology of Animals · RUState Research Center of Virology and Biotechnology VECTOR · RUUniversity of New Mexico · US

Funding

Small Grants ProgramP30GM114737 · NIGMS · UNIVERSITY OF HAWAII AT MANOA · PI DENG, YOUPING · 2015 to 2022
$8.1M
Pacific Center for Emerging Infectious Diseases ResearchP20GM103516 · NIGMS · UNIVERSITY OF HAWAII AT MANOA · PI YANAGIHARA, RICHARD · 2012 to 2014
$6.1M
Intraspecies Transmission and Infectivity of Insectivore-Borne HantavirusesR01AI075057 · NIAID · UNIVERSITY OF HAWAII AT MANOA · PI YANAGIHARA, RICHARD · 2008 to 2011
$1.5M
NIAID NIH HHS R01 AI075057NIGMS NIH HHS P20 GM103516NIGMS NIH HHS P30 GM114737
6 · The paper itself

Abstract

Although based on very limited M and L segment sequences, Artybash virus (ARTV) was proposed previously as a unique hantavirus harbored by the Laxmann's shrew (Sorex caecutiens). To verify this conjecture, lung tissues from 68 Laxmann's shrews, captured during 2006 to 2014 in eastern Siberia, Russia, and Hokkaido, Japan, were analyzed for ARTV RNA using reverse transcription polymerase chain reaction (RT-PCR). ARTV RNA was detected in six Laxmann's shrews. Pairwise alignment and comparison of partial- and full-length S, M, and L segment sequences from these Laxmann's shrews, as well as phylogenetic analyses, using maximum likelihood and Bayesian methods indicated that ARTV was distinct from other soricine shrew-borne hantaviruses and representative hantaviruses harbored by rodents, moles, and bats. Taxonomic identity of the ARTV-infected Laxmann's shrews was confirmed by full-length cytochrome b mitochondrial DNA sequence analysis. Our data indicate that the hantavirus previously known as Amga virus (MGAV) represents genetic variants of ARTV. Thus, the previously proposed designation of ARTV/MGAV should be replaced by ARTV.

Indexed as

Genetic VariationAnimalsHantavirus InfectionsOrthohantavirusPhylogenyRNA, ViralRussiaShrewsRNA, ViralHantavirusJapanRT-PCRRussiaShrew.

Identifiers

PMID27172519
PMCPMC4931335
OpenAlexW2388922561

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.