Evidence map›Paper›PMID 27172249›Full record

ArticleBritish journal of cancer2016

Prognostic value of a newly identified MALAT1 alternatively spliced transcript in breast cancer.

Didier Meseure, Sophie Vacher, François Lallemand, Kinan Drak Alsibai, Rana Hatem, Walid Chemlali, Andre Nicolas, Leanne De Koning, Eric Pasmant, Celine Callens and 3 more

Open access · hybridAbstract read
In one paragraph

Article in British journal of cancer, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 65 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
65citing papers in PubMed, 1 pooled it
4.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

65 citing papers in PubMed, 1 synthesis or guideline pooled it, 91 citations in OpenAlex.

  1. Pooled it
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  3. Review
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  12. Downregulation ofBiochemistry and biophysics reports · 2024
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  17. Differential Expression ofIranian journal of public health · 2023
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  18. Distinct gene expression patterns ofJournal of genetics · 2023
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  20. Review

5 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Didier MeseureDepartment of Genetics, Unit of Pharmacogenetics, Institut Curie, 26 rue d'Ulm, Paris Cedex F-75248, France.
Sophie VacherDepartment of Genetics, Unit of Pharmacogenetics, Institut Curie, 26 rue d'Ulm, Paris Cedex F-75248, France.
François LallemandDepartment of Genetics, Unit of Pharmacogenetics, Institut Curie, 26 rue d'Ulm, Paris Cedex F-75248, France.
Kinan Drak AlsibaiDepartment of Pathology, Platform of Investigative Pathology, Institut Curie, 26 rue d'Ulm, Paris Cedex F-75248, France.
Rana HatemDepartment of Genetics, Unit of Pharmacogenetics, Institut Curie, 26 rue d'Ulm, Paris Cedex F-75248, France.
Walid ChemlaliDepartment of Genetics, Unit of Pharmacogenetics, Institut Curie, 26 rue d'Ulm, Paris Cedex F-75248, France.
Andre NicolasDepartment of Pathology, Platform of Investigative Pathology, Institut Curie, 26 rue d'Ulm, Paris Cedex F-75248, France.
Leanne De KoningDepartment of Translational Research, Institut Curie, 26 rue d'Ulm, Paris Cedex F-75248, France.
Eric PasmantEA7331, Faculty of Pharmaceutical and Biological Sciences, Paris Descartes University, Sorbonne Paris Cité, Paris Cedex F-75006, France.
Celine CallensDepartment of Genetics, Unit of Pharmacogenetics, Institut Curie, 26 rue d'Ulm, Paris Cedex F-75248, France.
Rosette LidereauDepartment of Genetics, Unit of Pharmacogenetics, Institut Curie, 26 rue d'Ulm, Paris Cedex F-75248, France.
Antonin MorillonCNRS UMR 3244, Institut Curie, 26 rue d'Ulm, Paris Cedex F-75248, France.
Ivan BiecheDepartment of Genetics, Unit of Pharmacogenetics, Institut Curie, 26 rue d'Ulm, Paris Cedex F-75248, France.
Institut Curie · FRDélégation Paris 5 · FRCentre National de la Recherche Scientifique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundEpigenetic deregulation is considered as a new hallmark of cancer. The long non-coding RNA MALAT1 has been implicated in several cancers; however, its role in breast cancer is still little known.

methodsWe used RT-PCR, in situ hybridisation, and RPPA methods to quantify (i) the full-length (FL) and an alternatively spliced variant (Δsv) of MALAT1, and (ii) a panel of transcripts and proteins involved in MALAT1 pathways, in a large series of breast tumours from patients with known clinical/pathological status and long-term outcome.

resultsMALAT1 was overexpressed in 14% (63/446) of the breast tumours. MALAT1-overexpressed tumour epithelial cells showed marked diffuse nuclear signals and numerous huge nuclear speckles. Screening of the dbEST database led to the identification of Δsv-MALAT1, a major alternatively spliced MALAT1 transcript, with a very different expression pattern compared with FL-MALAT1. This alternative Δsv-MALAT1 transcript was mainly underexpressed (18.8%) in our breast tumour series. Multivariate analysis showed that alternative Δsv-MALAT1 transcript is an independent prognostic factor. Δsv-MALAT1 expression was associated with alterations of the pre-mRNAs alternative splicing machinery, and of the Drosha-DGCR8 complex required for non-coding RNA biogenesis. Alternative Δsv-MALAT1 transcript expression was associated to YAP protein status and with an activation of the PI3K-AKT pathway.

conclusionsOur results reveal a complex expression pattern of various MALAT1 transcript variants in breast tumours, and suggest that this pattern of expressions should be taken into account to evaluate MALAT1 as predictive biomarker and therapeutic target.

Indexed as

AdultAgedAged, 80 and overAlternative SplicingBreast NeoplasmsCell ProliferationEpigenomicsFemaleHumansMiddle AgedPrognosisRNA, Long NoncodingRNA, MessengerCDKN2B antisense RNA, humanHOTAIR long untranslated RNA, humanMALAT1 long non-coding RNA, humanRNA, Long NoncodingRNA, Messenger

Identifiers

PMID27172249
PMCPMC4984455
OpenAlexW2373495149

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.