Evidence map›Paper›PMID 27172206›Full record

ArticleG3 (Bethesda, Md.)2016

Fine Mapping of the Barley Chromosome 6H Net Form Net Blotch Susceptibility Locus.

Jonathan Richards, Shiaoman Chao, Timothy Friesen, Robert Brueggeman

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
8.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 48 citations in OpenAlex.

  1. Article
  2. Article
  3. Genetic and physical localization of a major susceptibility gene to Pyrenophora teres f. maculata in barley.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Frontiers in plant science · 2021
    Review
  10. Review
  11. The BarleyFrontiers in genetics · 2020
    Article
  12. Review
  13. Article
  14. Article
  15. PyramidingFrontiers in plant science · 2018
    Article
  16. Article
  17. Association mapping utilizing diverse barley lines reveals net form net blotch seedling resistance/susceptibility loci.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2017
    Article
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Jonathan RichardsDepartment of Plant Pathology, North Dakota State University, Fargo, North Dakota 58108-6050.
Shiaoman ChaoUnited States Department of Agriculture-Agricultural Research Service (USDA-ARS), Red River Valley Agricultural Research Center, Cereal Crops Research Unit, Fargo, North Dakota, 58102-2765.
Timothy FriesenDepartment of Plant Pathology, North Dakota State University, Fargo, North Dakota 58108-6050 United States Department of Agriculture-Agricultural Research Service (USDA-ARS), Red River Valley Agricultural Research Center, Cereal Crops Research Unit, Fargo, North Dakota, 58102-2765.
Robert BrueggemanDepartment of Plant Pathology, North Dakota State University, Fargo, North Dakota 58108-6050 Robert.Brueggeman@ndsu.edu.
North Dakota State University · USAgricultural Research Service · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Net form net blotch, caused by the necrotrophic fungal pathogen Pyrenophora teres f. teres, is a destructive foliar disease of barley with the potential to cause significant yield loss in major production regions throughout the world. The complexity of the host-parasite genetic interactions in this pathosystem hinders the deployment of effective resistance in barley cultivars, warranting a deeper understanding of the interactions. Here, we report on the high-resolution mapping of the dominant susceptibility locus near the centromere of chromosome 6H in the barley cultivars Rika and Kombar, which are putatively targeted by necrotrophic effectors from P. teres f. teres isolates 6A and 15A, respectively. Utilization of progeny isolates derived from a cross of P. teres f. teres isolates 6A × 15A harboring single major virulence loci (VK1, VK2, and VR2) allowed for the Mendelization of single inverse gene-for-gene interactions in a high-resolution population consisting of 2976 Rika × Kombar recombinant gametes. Brachypodium distachyon synteny was exploited to develop and saturate the susceptibility region with markers, delimiting it to ∼0.24 cM and a partial physical map was constructed. This genetic and physical characterization further resolved the dominant susceptibility locus, designated Spt1 (susceptibility to P. teres f. teres). The high-resolution mapping and cosegregation of the Spt1.R and Spt1.K gene/s indicates tightly linked genes in repulsion or alleles possibly targeted by different necrotrophic effectors. Newly developed barley genomic resources greatly enhance the efficiency of positional cloning efforts in barley, as demonstrated by the Spt1 fine mapping and physical contig identification reported here.

Indexed as

Contig MappingQuantitative Trait LociAscomycotaChromosomes, Artificial, BacterialChromosomes, PlantCrosses, GeneticDisease ResistanceDisease SusceptibilityEpistasis, GeneticGenetic MarkersHordeumHost-Pathogen InteractionsPlant DiseasesSyntenyVirulenceGenetic Markershigh-resolution mappinginverse gene-for-genenecrotrophic specialist

Identifiers

PMID27172206
PMCPMC4938636
OpenAlexW2385758573

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.