ArticleG3 (Bethesda, Md.)2016
Identifying Genetic Signatures of Natural Selection Using Pooled Population Sequencing in Picea abies.
Article in G3 (Bethesda, Md.), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.
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Who cites it
16 citing papers in PubMed.
- Genomic divergence, local adaptation, and complex demographic history may inform management of a popular sportfish species complex.Ecology and evolution · 2022Article
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- Genomic Adaptive Evolution of Sand Rice (Frontiers in genetics · 2021Article
- Evolvability of Drought Response in Four Native and Non-native Conifers: Opportunities for Forest and Genetic Resource Management in Europe.Frontiers in plant science · 2021Article
- Within-population sperm competition intensity does not predict asymmetry in conpopulation sperm precedence.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2020Article
- Demography and Natural Selection Have Shaped Genetic Variation in the Widely Distributed Conifer Norway Spruce (Picea abies).Genome biology and evolution · 2020Article
- Adaptive signals of flowering time pathways in wild barley from Israel over 28 generations.Heredity · 2020Article
- A multiscale approach to detect selection in nonmodel tree species: Widespread adaptation despite population decline inEvolutionary applications · 2020Article
- Genomic data provide new insights on the demographic history and the extent of recent material transfers in Norway spruce.Evolutionary applications · 2019Article
- Allele Frequency DifferenceGenes · 2019Article
- Comparing genomic signatures of domestication in two Atlantic salmon (Evolutionary applications · 2019Article
- Measuring Genetic Differentiation from Pool-seq Data.Genetics · 2018Article
- Drought Sensitivity of Norway Spruce at the Species' Warmest Fringe: Quantitative and Molecular Analysis Reveals High Genetic Variation Among and Within Provenances.G3 (Bethesda, Md.) · 2018Article
- Signatures of Selection in the Genomes of Chinese Chestnut (Frontiers in plant science · 2018Article
- Association genetics of phenolic needle compounds in Norway spruce with variable susceptibility to needle bladder rust.Plant molecular biology · 2017Article
- Range-wide phenotypic and genetic differentiation in wild sunflower.BMC plant biology · 2016Article
Corrections and comments
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Authors and funding
6 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The joint inference of selection and past demography remain a costly and demanding task. We used next generation sequencing of two pools of 48 Norway spruce mother trees, one corresponding to the Fennoscandian domain, and the other to the Alpine domain, to assess nucleotide polymorphism at 88 nuclear genes. These genes are candidate genes for phenological traits, and most belong to the photoperiod pathway. Estimates of population genetic summary statistics from the pooled data are similar to previous estimates, suggesting that pooled sequencing is reliable. The nonsynonymous SNPs tended to have both lower frequency differences and lower FST values between the two domains than silent ones. These results suggest the presence of purifying selection. The divergence between the two domains based on synonymous changes was around 5 million yr, a time similar to a recent phylogenetic estimate of 6 million yr, but much larger than earlier estimates based on isozymes. Two approaches, one of them novel and that considers both FST and difference in allele frequencies between the two domains, were used to identify SNPs potentially under diversifying selection. SNPs from around 20 genes were detected, including genes previously identified as main target for selection, such as PaPRR3 and PaGI.
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