Evidence map›Paper›PMID 27172004›Full record

ReviewJournal of integrative plant biology2016

Deciphering the epitranscriptome: A green perspective.

Alice Burgess, Rakesh David, Iain Robert Searle

Open access · hybridAbstract readReview
In one paragraph

Review in Journal of integrative plant biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 65 citations in OpenAlex.

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  15. Thermopriming triggers splicing memory in Arabidopsis.Journal of experimental botany · 2018
    Article
  16. Review
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  18. Deciphering the epitranscriptome: A green perspective.Journal of integrative plant biology · 2016
    Review
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Alice BurgessSchool of Biological Sciences, The University of Adelaide, South Australia,, 5005, Australia.
Rakesh DavidSchool of Biological Sciences, The University of Adelaide, South Australia,, 5005, Australia.
Iain Robert SearleSchool of Biological Sciences, The University of Adelaide, South Australia,, 5005, Australia. iain.searle@adelaide.edu.au.
The University of Adelaide · AUAustralian Wine Research Institute · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The advent of high-throughput sequencing technologies coupled with new detection methods of RNA modifications has enabled investigation of a new layer of gene regulation - the epitranscriptome. With over 100 known RNA modifications, understanding the repertoire of RNA modifications is a huge undertaking. This review summarizes what is known about RNA modifications with an emphasis on discoveries in plants. RNA ribose modifications, base methylations and pseudouridylation are required for normal development in Arabidopsis, as mutations in the enzymes modifying them have diverse effects on plant development and stress responses. These modifications can regulate RNA structure, turnover and translation. Transfer RNA and ribosomal RNA modifications have been mapped extensively and their functions investigated in many organisms, including plants. Recent work exploring the locations, functions and targeting of N

Indexed as

5-MethylcytosineAdenosineArabidopsisHigh-Throughput Nucleotide SequencingPseudouridineRNA Processing, Post-TranscriptionalTranscriptome5-MethylcytosineAdenosineN-methyladenosinePseudouridineArabidopsisepitranscriptomeN6-methyladenosine (m6A)Pseudouridine (Ψ)RNA 5-methylcytosine (m5C)RNA modifications

Identifiers

PMID27172004
PMCPMC5094531
OpenAlexW2460359774

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.