Evidence map›Paper›PMID 27171548›Full record

ArticleGenetics in medicine : official journal of the American College of Medical Genetics2017

Enrichment of mutations in chromatin regulators in people with Rett syndrome lacking mutations in MECP2.

Samin A Sajan, Shalini N Jhangiani, Donna M Muzny, Richard A Gibbs, James R Lupski, Daniel G Glaze, Walter E Kaufmann, Steven A Skinner, Fran Annese, Michael J Friez and 3 more

Registry-linked trialOpen access · bronzeAbstract read
In one paragraph

Article in Genetics in medicine : official journal of the American College of Medical Genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT02738281 (Rett Syndrome, MECP2 Duplication Disorder, and Rett- Related Disorders Natural History Protocol), which is not on this map. Cited by 43 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed, 1 pooled it
9.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT02738281 completednot on this map

Rett Syndrome, MECP2 Duplication Disorder, and Rett- Related Disorders Natural History Protocol

TypeobservationalSponsorUniversity of Alabama at BirminghamRan2015 to 2021Enrolled1,044ConditionsRett Syndrome, MECP2 Duplication dIsorder, CDKL5 Disorder, FOXG1 Syndrome
3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 1 synthesis or guideline pooled it, 80 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Review
  4. Article
  5. Article
  6. Rett syndrome.Nature reviews. Disease primers · 2024
    Review
  7. Rett syndrome: The Natural History Study journey.Annals of the Child Neurology Society · 2024
    Review
  8. Preliminary Study on Clinical Characteristics and Pathogenesis ofPharmacogenomics and personalized medicine · 2024
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Disruption of MeCP2-TCF20 complex underlies distinct neurodevelopmental disorders.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  14. Review
  15. Article
  16. Review
  17. The Role of Thyroid Hormone in the Regulation of Cerebellar Development.Endocrinology and metabolism (Seoul, Korea) · 2021
    Article
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 1 country.

Samin A SajanSection of Child Neurology and Developmental Neuroscience, Department of Pediatrics, Baylor College of Medicine, Houston, Texas, USA.
Shalini N JhangianiHuman Genome Sequencing Center, Baylor College of Medicine, Houston, Texas, USA.
Donna M MuznyHuman Genome Sequencing Center, Baylor College of Medicine, Houston, Texas, USA.
Richard A GibbsHuman Genome Sequencing Center, Baylor College of Medicine, Houston, Texas, USA.
James R LupskiHuman Genome Sequencing Center, Baylor College of Medicine, Houston, Texas, USA.ORCID 0000-0001-9907-9246
Daniel G GlazeSection of Child Neurology and Developmental Neuroscience, Department of Pediatrics, Baylor College of Medicine, Houston, Texas, USA.
Walter E KaufmannDepartment of Neurology, Boston Children's Hospital, Boston, Massachusetts, USA.
Steven A SkinnerGreenwood Genetic Center, Greenwood, South Carolina, USA.ORCID 0000-0003-3844-0792
Fran AnneseGreenwood Genetic Center, Greenwood, South Carolina, USA.
Michael J FriezGreenwood Genetic Center, Greenwood, South Carolina, USA.
Jane LaneDepartment of Pediatrics, University of Alabama at Birmingham, Birmingham, Alabama, USA.
Alan K PercyDepartment of Pediatrics, University of Alabama at Birmingham, Birmingham, Alabama, USA.
Jeffrey L NeulSection of Child Neurology and Developmental Neuroscience, Department of Pediatrics, Baylor College of Medicine, Houston, Texas, USA.ORCID 0000-0002-5628-5872
Baylor College of Medicine · USGreenwood Genetic Center · USUniversity of Alabama at Birmingham · USBoston Children's Hospital · US

Funding

Baylor-Johns Hopkins Center for Mendelian GeneticsU54HG006542 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI VALLE, DAVID · 2012 to 2015
$15.6M
Training and Career Development ComponentU54HD061222 · NICHD · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI PERCY, ALAN KENNETH · 2009 to 2019
$12.4M
Steps towards a paternal gene activation therapy for Angelman syndromeU54HD083092 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI NELSON, DAVID LOREN, SAMACO, RODNEY C · 2014 to 2019
$7.8M
NHGRI NIH HHS U54 HG006542NICHD NIH HHS U54 HD061222NICHD NIH HHS U54 HD083092
6 · The paper itself

Abstract

purposeRett syndrome (RTT) is a neurodevelopmental disorder caused primarily by de novo mutations in MECP2 and sometimes in CDKL5 and FOXG1. However, some RTT patients lack mutations in these genes.

methodsTwenty-two RTT patients without apparent MECP2, CDKL5, and FOXG1 mutations were subjected to both whole-exome sequencing and single-nucleotide polymorphism array-based copy-number variant (CNV) analyses.

resultsThree patients had MECP2 mutations initially missed by clinical testing. Of the remaining 19, 17 (89.5%) had 29 other likely pathogenic intragenic mutations and/or CNVs (10 patients had 2 or more). Interestingly, 13 patients had mutations in a gene/region previously reported in other neurodevelopmental disorders (NDDs), thereby providing a potential diagnostic yield of 68.4%. These mutations were significantly enriched in chromatin regulators (corrected P = 0.0068) and moderately enriched in postsynaptic cell membrane molecules (corrected P = 0.076), implicating glutamate receptor signaling.

conclusionThe genetic etiology of RTT without MECP2, CDKL5, and FOXG1 mutations is heterogeneous, overlaps with other NDDs, and complicated by a high mutation burden. Dysregulation of chromatin structure and abnormal excitatory synaptic signaling may form two common pathological bases of RTT.Genet Med 19 1, 13-19.

Indexed as

AdolescentAdultChildChild, PreschoolChromatinDNA Copy Number VariationsExome SequencingFemaleForkhead Transcription FactorsHumansInfantMaleMethyl-CpG-Binding Protein 2MutationNerve Tissue ProteinsPolymorphism, Single NucleotideCDKL5 protein, humanChromatinForkhead Transcription FactorsFOXG1 protein, humanMECP2 protein, humanMethyl-CpG-Binding Protein 2Nerve Tissue ProteinsProtein Serine-Threonine Kinases

Identifiers

PMID27171548
PMCPMC5107176
OpenAlexW2392834811

What OpenQuestion holds

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.