Evidence map›Paper›PMID 27171468›Full record

ArticlePloS one2016

Deciphering the Bacterial Microbiome in Huanglongbing-Affected Citrus Treated with Thermotherapy and Sulfonamide Antibiotics.

Chuanyu Yang, Charles A Powell, Yongping Duan, Robert Shatters, Jingping Fang, Muqing Zhang

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
6.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 31 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. An Overview of the Mechanisms Against "Frontiers in microbiology · 2022
    Review
  5. Transcriptomic Response of Huanglongbing-InfectedFrontiers in plant science · 2021
    Article
  6. Defeating Huanglongbing PathogenFrontiers in plant science · 2021
    Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Chuanyu YangState Key Lab for Conservation and Utilization of Subtropical Agro-biological Resources, Guangxi University, Nanning, 530005, China.ORCID 0000-0003-1194-208X
Charles A PowellIndian River Research and Education Center, IFAS, University of Florida, Fort Pierce, FL, 34945, United States of America.
Yongping DuanHorticultural Research Lab, USDA-ARS, Fort Pierce, FL, 34945, United States of America.
Robert ShattersHorticultural Research Lab, USDA-ARS, Fort Pierce, FL, 34945, United States of America.
Jingping FangCollege of Crop Science, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
Muqing ZhangState Key Lab for Conservation and Utilization of Subtropical Agro-biological Resources, Guangxi University, Nanning, 530005, China.
Guangxi University · CNU.S. Horticultural Research Laboratory · USFujian Agriculture and Forestry University · CNIndian River State College · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Huanglongbing (HLB) is a serious citrus disease that threatens the citrus industry. In previous studies, sulfonamide antibiotics and heat treatment suppressed 'Candidatus Liberibacter asiaticus' (Las), but did not completely eliminate the Las. Furthermore, there are few reports studying the bacterial microbiome of HLB-affected citrus treated by heat and sulfonamide antibiotics. In this study, combinations of heat (45°C or 40°C) and sulfonamide treatment (sulfathiazole sodium-STZ, or sulfadimethoxine sodium-SDX) were applied to HLB-affected citrus. The bacterial microbiome of HLB-affected citrus following thermotherapy and/or chemotherapy was characterized by PhyloChipTMG3-based metagenomics. Our results showed that the combination of thermotherapy at 45°C and chemotherapy with STZ and SDX was more effective against HLB than thermotherapy alone, chemotherapy alone, or a combination of thermotherapy at 40°C and chemotherapy. The PhyloChipTMG3-based results indicated that 311 empirical Operational Taxonomic Units (eOTUs) were detected in 26 phyla. Cyanobacteria (18.01%) were dominant after thermo-chemotherapy. Thermotherapy at 45°C decreased eOTUs (64.43%) in leaf samples, compared with thermotherapy at 40°C (73.96%) or without thermotherapy (90.68%) and it also reduced bacterial family biodiversity. The eOTU in phylum Proteobacteria was reduced significantly and eOTU_28, representing "Candidatus Liberibacter," was not detected following thermotherapy at 45°C. Following antibiotic treatment with SDX and STZ, there was enhanced abundance of specific eOTUs belonging to the families Streptomycetaceae, Desulfobacteraceae, Chitinophagaceae, and Xanthomonadaceae, which may be implicated in increased resistance to plant pathogens. Our study further develops an integrated strategy for combating HLB, and also provides new insight into the bacterial microbiome of HLB-affected citrus treated by heat and sulfonamide antibiotics.

Indexed as

Hyperthermia, InducedAnti-Bacterial AgentsBacteriaBiodiversityCitrusMicrobiotaPhylogenyPlant DiseasesSulfonamidesTemperatureAnti-Bacterial AgentsSulfonamides

Identifiers

PMID27171468
PMCPMC4865244
OpenAlexW2371821326

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.