Evidence map›Paper›PMID 27171427›Full record

ArticlePLoS genetics2016

Two Components of the RNA-Directed DNA Methylation Pathway Associate with MORC6 and Silence Loci Targeted by MORC6 in Arabidopsis.

Zhang-Wei Liu, Jin-Xing Zhou, Huan-Wei Huang, Yong-Qiang Li, Chang-Rong Shao, Lin Li, Tao Cai, She Chen, Xin-Jian He

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
11.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 52 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Heterochromatin in plant meiosis.Nucleus (Austin, Tex.) · 2024
    Review
  5. Review
  6. Review
  7. Article
  8. Article
  9. The MOM1 complex recruits the RdDM machinery via MORC6 to establishbioRxiv : the preprint server for biology · 2023
    Article
  10. DNA polymerase epsilon binds histone H3.1-H4 and recruits MORC1 to mediate meiotic heterochromatin condensation.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  11. DNA polymerase epsilon interacts with SUVH2/9 to repress the expression of genes associated with meiotic DSB hotspot inProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  12. Review
  13. Article
  14. Article
  15. Review
  16. Article
  17. Review
  18. Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Zhang-Wei LiuCollege of Biological Sciences, China Agricultural University, Beijing, China.
Jin-Xing ZhouNational Institute of Biological Sciences, Beijing, China.
Huan-Wei HuangNational Institute of Biological Sciences, Beijing, China.
Yong-Qiang LiNational Institute of Biological Sciences, Beijing, China.
Chang-Rong ShaoNational Institute of Biological Sciences, Beijing, China.
Lin LiNational Institute of Biological Sciences, Beijing, China.
Tao CaiNational Institute of Biological Sciences, Beijing, China.
She ChenNational Institute of Biological Sciences, Beijing, China.
Xin-Jian HeNational Institute of Biological Sciences, Beijing, China.ORCID 0000-0002-2878-7461
National Institute of Biological Sciences, Beijing · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The SU(VAR)3-9 homolog SUVH9 and the double-stranded RNA-binding protein IDN2 were thought to be components of an RNA-directed DNA methylation (RdDM) pathway in Arabidopsis. We previously found that SUVH9 interacts with MORC6 but how the interaction contributes to transcriptional silencing remains elusive. Here, our genetic analysis indicates that SUVH2 and SUVH9 can either act in the same pathway as MORC6 or act synergistically with MORC6 to mediate transcriptional silencing. Moreover, we demonstrate that IDN2 interacts with MORC6 and mediates the silencing of a subset of MORC6 target loci. Like SUVH2, SUVH9, and IDN2, other RdDM components including Pol IV, Pol V, RDR2, and DRM2 are also required for transcriptional silencing at a subset of MORC6 target loci. MORC6 was previously shown to mediate transcriptional silencing through heterochromatin condensation. We demonstrate that the SWI/SNF chromatin-remodeling complex components SWI3B, SWI3C, and SWI3D interact with MORC6 as well as with SUVH9 and then mediate transcriptional silencing. These results suggest that the RdDM components are involved not only in DNA methylation but also in MORC6-mediated heterochromatin condensation. This study illustrates how DNA methylation is linked to heterochromatin condensation and thereby enhances transcriptional silencing at methylated genomic regions.

Indexed as

Transcription, GeneticAdenosine TriphosphatasesArabidopsis ProteinsChromatin Assembly and DisassemblyDNA MethylationGene Expression Regulation, PlantGene SilencingHeterochromatinHistone-Lysine N-MethyltransferaseMethyltransferasesRNA-Binding ProteinsRNA, Double-StrandedAdenosine TriphosphatasesArabidopsis ProteinsHeterochromatinHistone-Lysine N-MethyltransferaseIDN2 protein, ArabidopsisMethyltransferasesMORC6 protein, ArabidopsisRNA-Binding ProteinsRNA, Double-StrandedSU(VAR)3-9SUVH2 protein, Arabidopsis

Identifiers

PMID27171427
PMCPMC4865133
OpenAlexW2394446836

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.