Evidence map›Paper›PMID 27169002›Full record

ArticlePeerJ2016

Comparative analysis of prophage-like elements in Helicobacter sp. genomes.

Xiangyu Fan, Yumei Li, Rong He, Qiang Li, Wenxing He

Open access · goldAbstract read
In one paragraph

Article in PeerJ, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 19 citations in OpenAlex.

  1. Characterization and Genomic Analysis of a New Phage InfectingInternational journal of molecular sciences · 2022
    Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Relating Phage Genomes toInternational journal of molecular sciences · 2018
    Review
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Xiangyu FanSchool of Biological Science and Technology, University of Jinan , Jinan , China.
Yumei LiSchool of Biological Science and Technology, University of Jinan , Jinan , China.
Rong HeSchool of Biological Science and Technology, University of Jinan , Jinan , China.
Qiang LiSchool of Biological Science and Technology, University of Jinan , Jinan , China.
Wenxing HeSchool of Biological Science and Technology, University of Jinan , Jinan , China.
University of Jinan · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Prophages are regarded as one of the factors underlying bacterial virulence, genomic diversification, and fitness, and are ubiquitous in bacterial genomes. Information on Helicobacter sp. prophages remains scarce. In this study, sixteen prophages were identified and analyzed in detail. Eight of them are described for the first time. Based on a comparative genomic analysis, these sixteen prophages can be classified into four different clusters. Phylogenetic relationships of Cluster A Helicobacter prophages were investigated. Furthermore, genomes of Helicobacter prophages from Clusters B, C, and D were analyzed. Interestingly, some putative antibiotic resistance proteins and virulence factors were associated with Helicobacter prophages.

Indexed as

Comparative genomicsHelicobacterPhylogenyProphage

Identifiers

PMID27169002
PMCPMC4860318
OpenAlexW2393177329

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.