ArticlePLoS genetics2016
DNA Sequence Evolution and Rare Homoeologous Conversion in Tetraploid Cotton.
Article in PLoS genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 14 papers.
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Who cites it
14 citing papers in PubMed, 50 citations in OpenAlex.
- Cotton genetic mapping for plant biotechnology: from markers to graph pan-genomes and sustainable breeding.Frontiers in plant science · 2026Review
- Does one subgenome become dominant in the formation and evolution of a polyploid?Annals of botany · 2023Article
- Genome-Wide Association Analysis of Salt-Tolerant Traits in Terrestrial Cotton at Seedling Stage.Plants (Basel, Switzerland) · 2021Article
- Genome-wide identification of the DUF668 gene family in cotton and expression profiling analysis of GhDUF668 in Gossypium hirsutum under adverse stress.BMC genomics · 2021Article
- Parallel and Intertwining Threads of Domestication in Allopolyploid Cotton.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2021Article
- Cotton pan-genome retrieves the lost sequences and genes during domestication and selection.Genome biology · 2021Article
- Sequencing Multiple Cotton Genomes Reveals Complex Structures and Lays Foundation for Breeding.Frontiers in plant science · 2020Review
- Divergent Expression Patterns and Function of Two cxcr4 Paralogs in Hermaphroditic Epinephelus coioides.International journal of molecular sciences · 2018Article
- Whole Genome Incorporation and Epigenetic Stability in a Newly Synthetic Allopolyploid of Gynogenetic Gibel Carp.Genome biology and evolution · 2018Article
- Recent insights into cotton functional genomics: progress and future perspectives.Plant biotechnology journal · 2018Review
- Assessment of Gene Flow BetweenG3 (Bethesda, Md.) · 2017Article
- Genomic insights into divergence and dual domestication of cultivated allotetraploid cottons.Genome biology · 2017Article
- Reference Transcriptomes and Detection of Duplicated Copies in Hexaploid and Allododecaploid Spartina Species (Poaceae).Genome biology and evolution · 2016Article
- Correction: DNA Sequence Evolution and Rare Homoeologous Conversion in Tetraploid Cotton.PLoS genetics · 2016Article
Corrections and comments
- Erratum issued
Authors and funding
9 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Allotetraploid cotton species are a vital source of spinnable fiber for textiles. The polyploid nature of the cotton genome raises many evolutionary questions as to the relationships between duplicated genomes. We describe the evolution of the cotton genome (SNPs and structural variants) with the greatly improved resolution of 34 deeply re-sequenced genomes. We also explore the evolution of homoeologous regions in the AT- and DT-genomes and especially the phenomenon of conversion between genomes. We did not find any compelling evidence for homoeologous conversion between genomes. These findings are very different from other recent reports of frequent conversion events between genomes. We also identified several distinct regions of the genome that have been introgressed between G. hirsutum and G. barbadense, which presumably resulted from breeding efforts targeting associated beneficial alleles. Finally, the genotypic data resulting from this study provides access to a wealth of diversity sorely needed in the narrow germplasm of cotton cultivars.
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